Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Bogins, C., Beale, C. 2019. Conscious urine sampling and quantification from indwelling catheterization of female Yucatan swine. Laboratory Animal Science Professional 7(3) (September), 44-46.

In addition to routine diagnostic testing of urine for health status, data from urine collection is often necessary to support various nutritional, metabolic, biochemical, and physiologic studies. Collection methods can be stressful to the animal...

Boileau, A., Farish, M., Turner, S. P. et al. 2019. Infrared thermography of agonistic behaviour in pigs. Physiology & Behavior 210, 112637.

Infrared thermography (IRT) or thermal imaging is increasingly being used as a non-invasive method to gain information on animals' physiological and emotional state. IRT has the potential to serve as a non-invasive quantitative assessment method...

Morgan, L., Itin-Shwartz, B., Koren, L. et al. 2019. Physiological and economic benefits of abandoning invasive surgical procedures and enhancing animal welfare in swine production. Scientific Reports 9, 16093.

Food-animal welfare is a major ethical and social concern. Pork is the most consumed meat worldwide, with over a billion pigs slaughtered annually. Most of these pigs routinely undergo painful surgical procedures (surgical castration, tail...

Message, R., Greenhough, B. 2019. “But it’s just a fish”: Understanding the challenges of applying the 3Rs in laboratory aquariums in the UK. Animals 9(12), 1075.

Adopting a social science perspective and qualitative methodology on the problem of laboratory fish welfare, this paper examines some underlying social factors and drivers that influence thinking, priorities and implementation of fish welfare initiatives and...

D’Eath, R. B., Jack, M., Futro, A. et al. 2018. Automatic early warning of tail biting in pigs: 3D cameras can detect lowered tail posture before an outbreak. PLOS ONE 13(4), e0194524.

Tail biting is a major welfare and economic problem for indoor pig producers worldwide. Low tail posture is an early warning sign which could reduce tail biting unpredictability. Taking a precision livestock farming approach, we...

Chotard, H., Ioannou, S., Davila-Ross, M. 2018. Infrared thermal imaging: Positive and negative emotions modify the skin temperatures of monkey and ape faces. American Journal of Primatology 80(5), e22863.

Facial thermography has enabled researchers to noninvasively and continuously measure the changes of a range of emotional states in humans. The present work used this novel technology to study the effect of positive and negative...

Rius, M. M., Pageat, P., Bienboire-Frosini, C. et al. 2018. Tail and ear movements as possible indicators of emotions in pigs. Applied Animal Behaviour Science 205, 14-18.

A better understanding of animal emotions is an important goal in disciplines ranging from neuroscience to animal welfare science, but few reliable tools exist for measuring these emotions. Play behaviour is generally recognized as a...

Rius, M. M., Cozzi, A., Bienboire-Frosini, C. et al. 2018. Selection of putative indicators of positive emotions triggered by object and social play in mini-pigs. Applied Animal Behaviour Science 202, 13-19.

Positive welfare is more than the absence of negative experiences. Nevertheless, there are few feasible animal-based measures for positive welfare. This study aimed to investigate whether object and social play behaviours in pigs, which is...

Lahrmann, H. P., Hansen, C. F., D’Eath, R. et al. 2018. Tail posture predicts tail biting outbreaks at pen level in weaner pigs. Applied Animal Behaviour Science 200, 29-35.

Detecting a tail biting outbreak early is essential to reduce the risk of pigs getting severe tail damage. A few previous studies suggest that tail posture and behavioural differences can predict an upcoming outbreak. The...

Lutz, C. K. 2018. A cross-species comparison of abnormal behavior in three species of singly-housed old world monkeys. Applied Animal Behaviour Science 199, 52-58.

Abnormal behavior occurs in a number of captive nonhuman primate species and is often used as an indicator of welfare. However, reported levels of abnormal behavior often vary across species, making general welfare judgments difficult...

Brown, S.M., Peters, R., Nevison, I.M. et al. 2018. Playful pigs: Evidence of consistency and change in play depending on litter and developmental stage. Applied Animal Behaviour Science 198, 36-43.

Play behaviour in pre-weaned piglets has previously been shown to vary consistently between litters. This study aimed to determine if these pre-weaning litter differences in play behaviour were also consistent in the post-weaning period. Seven...

Wedin, M., Baxter, E. M., Jack, M. et al. 2018. Early indicators of tail biting outbreaks in pigs. Applied Animal Behaviour Science 208, 7-13.

Tail biting outbreaks in pig farming cause suffering through pain and stress, and producers lose revenue due to carcass condemnation. Reliable behavioural indications of when an outbreak is imminent would provide farmers with tools for...

Vestbjerg Larsen, M. L., Andersen, H. M.-L., Pedersen, L. J. 2018. Tail posture as a detector of tail damage and an early detector of tail biting in finishing pigs. Applied Animal Behaviour Science 209, 30-35.

The purpose of the current study was to investigate the relation between the tail posture of finishing pigs and tail damage with the aims to use tail posture as (1) a detector of tail damage...

Allen, P. J., Baumgartner, W., Brinkman, E. et al. 2018. Fin healing and regeneration in sturgeon. Journal of Fish Biology 93(5), 917-930.

Pectoral fin healing in fin spines and rays were examined in juvenile Atlantic sturgeon Acipenser oxyrinchus oxyrinchus following three different sampling techniques (n = 8-9 fish per treatment): entire leading fin spine removed, a 1-2...

White, E., Fernandez, J., Wilson, J. M. 2018. Mini-pig urine collection within a laboratory environment. Laboratory Animal Science Professional 6(1) (March), 36-39.

Urinalysis is a commonly used method of evaluating urinary tract or kidney function and to screen for progression of experimentally induced models of infection, urinary tract disease, diabetes mellitus, and hypertension, among others. The ideal...

Unakafov, A. M., Möller, S., Kagan, I. et al. 2018. Using imaging photoplethysmography for heart rate estimation in non-human primates. PLOS ONE 13(8), e0202581.

For humans and for non-human primates heart rate is a reliable indicator of an individual’s current physiological state, with applications ranging from health checks to experimental studies of cognitive and emotional state. In humans, changes...

Ekesbo, I., Gunnarsson, S. 2018. Farm Animal Behaviour: Characteristics for Assessment and Welfare (2nd ed). CABI, Wallingford, UK.

Completely updated and revised, and with a new author team, this second edition of Farm Animal Behaviour continues to provide essential information on normal and stereotypic behaviors in a wide variety of farm animals to...

Martin, A. L. 2017. Theprimatologist as a behavioral engineer. American Journal of Primatology 79, e22500.

The field of primate behavior management has had only limited success in preventing and treating abnormal behaviors, such as stereotypy and self‐injury, in captive non‐human primates (NHP). In contrast, applied behavior analysts have had great...

Leliveld, L. M. C., Düpjan, S., Tuchscherer, A. et al. 2017. Vocal correlates of emotional reactivity within and across contexts in domestic pigs (Sus scrofa). Physiology & Behavior 181, 117-126.

Vocalizations have long been recognized to encode information about an individual's emotional state and, as such, have contributed to the study of emotions in animals. However, the potential of vocalizations to also encode information about...

Zhang, M.-y., Li, X., Zhang, X.-h. et al. 2017. Effects of confinement duration and parity on stereotypic behavioral and physiological responses of pregnant sows. Physiology & Behavior 179, 369-376.

The aim of this study was to evaluate the effects of space restriction stress on the stereotypic behavioral and physiological responses of different parity sows, and it is necessary to understand such effects due to...

McMillan, J. L., Bloomsmith, M. A., Prescott, M. J. 2017. An international survey of approaches to chair restraint of nonhuman primates. Comparative Medicine 67(5), 442–451.

Specifically designed restraint chairs are the preferred method of restraint for research studies that require NHP to sit in place for sustained periods of time. In light of increasing emphasis on refinement of restraint to...

Stevens, C. H., Croft, D. P., Paull, G. C. et al. 2017. Stress and welfare in ornamental fishes: What can be learned from aquaculture? Journal of Fish Biology 91(2), 409-428.

The ornamental fish trade is estimated to handle up to 1.5 billion fishes. Transportation and handling of fishes imposes a range of stressors that can result in mortality at rates of up to 73%. Given...

Gabriel, S. M., Riley, K. M., Spinks, W. A. et al. 2017. Husbandry, care and enrichment of diabetic Sinclair swine in the laboratory environment. Laboratory Animal Science Professional 5(3) (September), 53-57.

Health monitoring, enrichment, training procedures and techniques, as well as instructions for the care of vascular access ports, are outlined in this paper. The procedures described herein helped maintain a successful, long-term research population of...

Roelofs, S., Murphy, E., Ni, H. et al. 2017. Judgement bias in pigs is independent of performance in a spatial holeboard task and conditional discrimination learning. Animal Cognition 20(4), 739–753.

Biases in judgement of ambiguous stimuli, as measured in a judgement bias task, have been proposed as a measure of the valence of affective states in animals. We recently suggested a list of criteria for...

Herrera, M., López, J., Herves, A. 2016. A preliminary approach on the stress assessment through harmless procedures in farmed seabream (Sparus aurata). Animal Welfare 25(4), 423-427.

Fish welfare is a key factor in ensuring successful cultures. Farmed fish that are stressed have been shown to be susceptible to pathologies and present lower growth rates. The present work seeks to check the...