Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
D’Eath, R. B., Jack, M., Futro, A. et al. 2018. Automatic early warning of tail biting in pigs: 3D cameras can detect lowered tail posture before an outbreak. PLOS ONE 13(4), e0194524.

Tail biting is a major welfare and economic problem for indoor pig producers worldwide. Low tail posture is an early warning sign which could reduce tail biting unpredictability. Taking a precision livestock farming approach, we...

McIlhone, A. E., Beausoleil, N. J., Kells, N. J. et al. 2018. Effects of noxious stimuli on the electroencephalogram of anaesthetised chickens (Gallus gallus domesticus). PLOS ONE 13(4), e0196454.

The reliable assessment and management of avian pain is important in the context of animal welfare. Overtly expressed signs of pain vary substantially between and within species, strains and individuals, limiting the use of behaviour...

Souza, A., Soriano, V. S., Schnaider, M. A. et al. 2018. Development and refinement of three animal-based broiler chicken welfare indicators. Animal Welfare 27(3), 263-274.

This study aimed to refine bird-soiling as a broiler chicken (Gallus gallus domesticus) welfare indicator, and to develop and test two additional indicators, namely contact dermatitis on the breast and abdominal areas and carcase scratches...

Casey-Trott, T. M., Widowski, T. M. 2018. Validation of an accelerometer to quantify inactivity in laying hens with or without keel-bone fractures. Animal Welfare 27(2), 103-114.

Accelerometers are used to remotely monitor activity in various species in studies that quantify pain, document behavioural patterns, and measure individual activity differences. Studies validating accelerometers typically quantify various active states; however, targeting states specific...

Clegg, I. 2018. Cognitive bias in zoo animals: An optimistic outlook for welfare assessment. Animals 8(7), 104.

Cognitive bias testing measures how emotional states can affect cognitive processes, often described using the “glass half-full/half-empty” paradigm. Classical or operant conditioning is used to measure responses to ambiguous cues, and it has been reported...

Wolfensohn, S., Shotton, J., Bowley, H. et al. 2018. Assessment of welfare in zoo animals: Towards optimum quality of life. Animals 8(7), 110.

Zoos are required to maintain a high standard of animal welfare, and this can be assessed using a combination of resource-based and animal-based indices usually divided into behavioural indicators, physiological indicators and clinical/pathological signs. Modern...

Battini, M., Barbieri, S., Vieira, A. et al. 2018. The use of qualitative behaviour assessment for the on-farm welfare assessment of dairy goats. Animals 8(7), 123.

This research investigated whether using qualitative behaviour assessment (QBA) with a fixed list of descriptors may be related to quantitative animal- (ABM) and resource-based (RBM) measures included in the AWIN (Animal Welfare Indicators) welfare assessment...

Chotard, H., Ioannou, S., Davila-Ross, M. 2018. Infrared thermal imaging: Positive and negative emotions modify the skin temperatures of monkey and ape faces. American Journal of Primatology 80(5), e22863.

Facial thermography has enabled researchers to noninvasively and continuously measure the changes of a range of emotional states in humans. The present work used this novel technology to study the effect of positive and negative...

Rius, M. M., Pageat, P., Bienboire-Frosini, C. et al. 2018. Tail and ear movements as possible indicators of emotions in pigs. Applied Animal Behaviour Science 205, 14-18.

A better understanding of animal emotions is an important goal in disciplines ranging from neuroscience to animal welfare science, but few reliable tools exist for measuring these emotions. Play behaviour is generally recognized as a...

Rius, M. M., Cozzi, A., Bienboire-Frosini, C. et al. 2018. Selection of putative indicators of positive emotions triggered by object and social play in mini-pigs. Applied Animal Behaviour Science 202, 13-19.

Positive welfare is more than the absence of negative experiences. Nevertheless, there are few feasible animal-based measures for positive welfare. This study aimed to investigate whether object and social play behaviours in pigs, which is...

Lahrmann, H. P., Hansen, C. F., D’Eath, R. et al. 2018. Tail posture predicts tail biting outbreaks at pen level in weaner pigs. Applied Animal Behaviour Science 200, 29-35.

Detecting a tail biting outbreak early is essential to reduce the risk of pigs getting severe tail damage. A few previous studies suggest that tail posture and behavioural differences can predict an upcoming outbreak. The...

Brown, S.M., Peters, R., Nevison, I.M. et al. 2018. Playful pigs: Evidence of consistency and change in play depending on litter and developmental stage. Applied Animal Behaviour Science 198, 36-43.

Play behaviour in pre-weaned piglets has previously been shown to vary consistently between litters. This study aimed to determine if these pre-weaning litter differences in play behaviour were also consistent in the post-weaning period. Seven...

Buijs, S., Booth, F., Richards, G. et al. 2018. Behavioural and physiological responses of laying hens to automated monitoring equipment. Applied Animal Behaviour Science 199, 17-23.

Automated monitoring of behaviour can offer a wealth of information in circumstances where observing behaviour is difficult or time consuming. However, this often requires attaching monitoring devices to the animal which can alter behaviour, potentially...

Kittelsen, K. E., Granquist, E. G., Aunsmo, A. L. et al. 2018. An evaluation of two different broiler catching methods. Animals 8(8), 141.

Catching is the first step in the pre-slaughter chain for broiler chickens. The process may be detrimental for animal welfare due to the associated handling. The aim of this pilot study was to compare two...

Muvhali, P. T., Bonato, M., Engelbrecht, A. et al. 2018. The effect of extensive human presence at an early age on stress responses and reactivity of juvenile ostriches towards humans. Animals 8(10), 175.

The effect of extensive human presence and regular gentle handling performed at an early age (0–3 months old) on stress responses and reactivity of juvenile ostriches towards humans was investigated. A total of 416 ostrich...

Wedin, M., Baxter, E. M., Jack, M. et al. 2018. Early indicators of tail biting outbreaks in pigs. Applied Animal Behaviour Science 208, 7-13.

Tail biting outbreaks in pig farming cause suffering through pain and stress, and producers lose revenue due to carcass condemnation. Reliable behavioural indications of when an outbreak is imminent would provide farmers with tools for...

Vestbjerg Larsen, M. L., Andersen, H. M.-L., Pedersen, L. J. 2018. Tail posture as a detector of tail damage and an early detector of tail biting in finishing pigs. Applied Animal Behaviour Science 209, 30-35.

The purpose of the current study was to investigate the relation between the tail posture of finishing pigs and tail damage with the aims to use tail posture as (1) a detector of tail damage...

Bertin, A., Cornilleau, F., Lemarchand, J. et al. 2018. Are there facial indicators of positive emotions in birds? A first exploration in Japanese quail. Behavioural Processes 157, 470-473.

The positive aspect of emotions, like pleasure, remains overlooked in birds. Our aim was to contribute to the exploration of facial indicators of positive emotions. To observe contrasting emotional expressions, we used two lines of...

Edwards, G. L., Michael, J. A., Parks., A. 2018. Agricultural animals as biomedical models: Occupational health and safety considerations. ILAR Journal 59(2), 161-167.

The use of agricultural animals in biomedical research is increasing. Their overall size and metabolic rate, organ size, longer gestation period, and other physiological similarities make them good candidates for animal models of human disease...

O’Rourke, D. P., Baccanale, C. L., Stoskopf, M. K. 2018. Nontraditional laboratory animal species (cephalopods, fish, amphibians, reptiles, and birds). ILAR Journal 59(2), 168-176.

Aquatic vertebrates and cephalopods, amphibians, reptiles, and birds offer unique safety and occupational health challenges for laboratory animal personnel. This paper discusses environmental, handling, and zoonotic concerns associated with these species.

Unakafov, A. M., Möller, S., Kagan, I. et al. 2018. Using imaging photoplethysmography for heart rate estimation in non-human primates. PLOS ONE 13(8), e0202581.

For humans and for non-human primates heart rate is a reliable indicator of an individual’s current physiological state, with applications ranging from health checks to experimental studies of cognitive and emotional state. In humans, changes...

Ekesbo, I., Gunnarsson, S. 2018. Farm Animal Behaviour: Characteristics for Assessment and Welfare (2nd ed). CABI, Wallingford, UK.

Completely updated and revised, and with a new author team, this second edition of Farm Animal Behaviour continues to provide essential information on normal and stereotypic behaviors in a wide variety of farm animals to...

McGrath, N., Dunlop, R. Dwyer, C. et al. 2017. Hens vary their vocal repertoire and structure when anticipating different types of reward. Animal Behaviour 130, 79-96.

The vocalizations of nonhuman animals are considered potential indicators of motivational or internal state. In many species, different call types, and structural variation within call types, encode information about physical characteristics such as age or...

Krebs, B. L., Torres, E., Chesney, C. et al. 2017. Applying behavioral conditioning to identify anticipatory behaviors. Journal of Applied Animal Welfare Science 20(2), 155-175.

The ability to predict regular events can be adaptive for nonhuman animals living in an otherwise unpredictable environment. Animals may exhibit behavioral changes preceding a predictable event; such changes reflect anticipatory behavior. Anticipatory behavior is...

Giersberg, M., Spindler, B., Kemper, N. 2017. Assessment of plumage and integument condition in dual-purpose breeds and conventional layers. Animals 7(12), 97.

The assessment of plumage and integument condition in laying hens provides useful information about the occurrence of feather pecking and cannibalism. Although feather loss and skin injuries can result from mechanical abrasion or clinical diseases...