Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Grant, E. P., Wickham, S. L., Anderson, F. et al. 2020. Preliminary findings on a novel behavioural approach for the assessment of pain and analgesia in lambs subject to routine husbandry procedures. Animals 10(7), 1148.

The identification and assessment of pain in sheep under field conditions are important, but, due to their stoic nature, are fraught with many challenges. In Australia, various husbandry procedures that are documented to cause pain...

Monk, J. E., Lee, C., Dickson, E., Campbell, D. L. M. 2020. Attention bias test measures negative but not positive affect in sheep: A replication study. Animals 10(8), 1314.

An attention bias test has been developed as a measure of negative affective states in sheep. The test measures an individual’s allocation of attention between a threatening (previous location of a dog) and positive (conspecific...

Taylor, P. 2020. Remote controlled nociceptive threshold testing systems in large animals. Animals 10(9), 1556.

Nociceptive threshold (NT) testing is widely used for the study of pain and its alleviation. The end point is a normal behavioural response, which may be affected by restraint or unfamiliar surroundings, leading to erroneous...

Hernandez, R. O., Sánchez, J. A., Romero, M. H. 2020. Iceberg indicators for animal welfare in rural sheep farms using the Five Domains model approach. Animals 10(12), 2273.

Animal welfare for sheep in extensive rural farms is difficult to quantify among rural farmers due to several factors, including the lack of technology and the low level of interaction they have with the animals...

Miretti, S., Lecchi, C., Ceciliani, F. et al. 2020. MicroRNAs as biomarkers for animal health and welfare in livestock. Frontiers in Veterinary Science 7, 578193.

MicroRNAs (miRNAs) are small and highly conserved non-coding RNA molecules that orchestrate a wide range of biological processes through the post-transcriptional regulation of gene expression. An intriguing aspect in identifying these molecules as biomarkers is...

Mogil, J. S., Pang, D. S. J., Silva Dutra, G. G. et al. 2020. The development and use of facial grimace scales for pain measurement in animals. Neuroscience & Biobehavioral Reviews 116, 480-496.

The measurement of pain in animals is surprisingly complex, and remains a critical issue in veterinary care and biomedical research. Based on the known utility of pain measurement via facial expression in verbal and especially...

McLennan, K., Mahmoud, M. 2019. Development of an automated pain facial expression detection system for sheep (Ovis aries). Animals 9(4), 196.

The use of technology to optimize the production and management of each individual animal is becoming key to good farming. There is a need for the real-time systematic detection and control of disease in animals...

Howell, C. P., Cheyne, S. M. 2019. Complexities of using wild versus captive activity budget comparisons for assessing captive primate welfare. Journal of Applied Animal Welfare Science 22(1), 78-96.

Activity budget comparisons between groups or individuals in the wild and those in captivity are commonly used to determine the range of wild-type behaviors that nonhuman animals in captivity perform. These comparisons are conducted with...

Fogarty, E. S., Swain, D. L., Cronin, G. M. et al. 2019. A systematic review of the potential uses of on-animal sensors to monitor the welfare of sheep evaluated using the Five Domains Model as a framework. Animal Welfare 28(4), 407-420.

This systematic review explores the use of on-animal sensors in sheep and their potential application in objective welfare monitoring. The key questions posed were: To what extent can current scientific knowledge inform a sensor-based approach...

Grant, E. P., Wickham, S. L., Anderson, F. et al. 2019. Remote identification of sheep with flystrike using behavioural observations. Animals 9(6), 368.

Flystrike is a major problem affecting sheep in Australia. Identification of 'flystruck' individuals is crucial for treatment; but requires labour-intensive physical examination. As the industry moves toward more low-input systems; there is a need for...

Mattiello, S., Battini, M., De Rosa, G. et al. 2019. How can we assess positive welfare in ruminants? Animals 9(10), 758.

Until now, most research has focused on the development of indicators of negative welfare, and relatively few studies provide information on valid, reliable, and feasible indicators addressing positive aspects of animal welfare. However, a lack...

McLennan, K., Mahmoud, M. 2019. Development of an automated pain facial expression detection system for sheep (Ovis aries). Animals 9(4), 196.

The use of technology to optimize the production and management of each individual animal is becoming key to good farming. There is a need for the real-time systematic detection and control of disease in animals...

Association of Primate Veterinarians. 2019. Association of Primate Veterinarians’ Position Statement: Cerebrospinal fluid aspiration for nonhuman primates in biomedical research. JAALAS 58(4), 428-429.

The Association of Primate Veterinarians (APV) recognizes that CSF collection may be required for both clinical and research purposes in nonhuman primates (NHP). Because there are inherent risks associated with the technique, the laboratory animal...

Balansard, I., Cleverley, L., Cutler, K. L. et al. 2019. Revised recommendations for health monitoring of non-human primate colonies (2018): FELASA Working Group Report. Laboratory Animals 53(5), 429–446.

The genetic and biological similarity between non-human primates and humans has ensured the continued use of primates in biomedical research where other species cannot be used. Health-monitoring programmes for non-human primates provide an approach to...

Busin, V., Viora, L., King, G. et al. 2019. Evaluation of lameness detection using radar sensing in ruminants. Veterinary Record 185(18), 572.

Background: Lameness is a major health, welfare and production-limiting condition for the livestock industries. The current ‘gold-standard’ method of assessing lameness by visual locomotion scoring is subjective and time consuming, whereas recent technological advancements have...

Khattak, R., Liu, Z., Teng, L. 2019. Development and implementation of baseline welfare assessment protocol for captive breeding of wild ungulate—Punjab urial (Ovis vignei punjabiensis, Lydekker 1913). Animals 9(12), 1102.

To ensure that captive breeding and other associated programs are more robust and sustainable, it is of utmost importance to ensure optimum welfare. Although it is well known that standard welfare is crucial for successful...

Monk, J. E., Doyle, R. E., Colditz, I. G. et al. 2018. Towards a more practical attention bias test to assess affective state in sheep. PLOS ONE 13(1), e0190404.

Tests for attention bias potentially offer more rapid assessment of affective state in animals than existing cognitive methods. An attention bias test has previously been developed for sheep and validated as a measure of anxious...

Munoz, C., Campbell, A., Hemsworth, P. et al. 2018. Animal-based measures to assess the welfare of extensively managed ewes. Animals 8(1), 2.

The reliability and feasibility of 10 animal-based measures of ewe welfare were examined for use in extensive sheep production systems. Measures were: Body condition score (BCS), rumen fill, fleece cleanliness, fleece condition, skin lesions, tail...

Chotard, H., Ioannou, S., Davila-Ross, M. 2018. Infrared thermal imaging: Positive and negative emotions modify the skin temperatures of monkey and ape faces. American Journal of Primatology 80(5), e22863.

Facial thermography has enabled researchers to noninvasively and continuously measure the changes of a range of emotional states in humans. The present work used this novel technology to study the effect of positive and negative...

Cannas, S., Palestrini, C., Canali, E. et al. 2018. Thermography as a non-invasive measure of stress and fear of humans in sheep. Animals 8(9), 146.

No data have been published on the use of infrared thermography (IRT) to evaluate sheep emotions. We assessed whether this technique can be used as a non-invasive measure of negative emotions. Two voluntary animal approach...

Grant, E. P., Brown, A., Wickham, S. L. et al. 2018. What can the quantitative and qualitative behavioural assessment of videos of sheep moving through an autonomous data capture system tell us about welfare? Applied Animal Behaviour Science 208, 31-39.

Sheep can be exposed to a variety of challenges and failure to adapt to these challenges can compromise their health and wellbeing. Regular monitoring of stock on large-scale or extensive systems may not always be...

Unakafov, A. M., Möller, S., Kagan, I. et al. 2018. Using imaging photoplethysmography for heart rate estimation in non-human primates. PLOS ONE 13(8), e0202581.

For humans and for non-human primates heart rate is a reliable indicator of an individual’s current physiological state, with applications ranging from health checks to experimental studies of cognitive and emotional state. In humans, changes...

Ekesbo, I., Gunnarsson, S. 2018. Farm Animal Behaviour: Characteristics for Assessment and Welfare (2nd ed). CABI, Wallingford, UK.

Completely updated and revised, and with a new author team, this second edition of Farm Animal Behaviour continues to provide essential information on normal and stereotypic behaviors in a wide variety of farm animals to...

Häger, C., Biernot, S., Buettner, M. et al. 2017. The Sheep Grimace Scale as an indicator of post-operative distress and pain in laboratory sheep. PLOS ONE 12(4), e0175839.

The EU Directive 2010/63/EU changed the requirements regarding the use of laboratory animals and raised important issues related to assessing the severity of all procedures undertaken on laboratory animals. However, quantifiable parameters to assess severity...

Serrapica, M., Boivin, X., Coulon, M. et al. 2017. Positive perception of human stroking by lambs: Qualitative behaviour assessment confirms previous interpretation of quantitative data. Applied Animal Behaviour Science 187, 31-37.

Qualitative behaviour assessment (QBA) was used to validate previous published interpretation whether human stroking has beneficial effects on lambs prematurely separated from their mothers. For a period of 8 weeks a familiar human (FH) subjected...