Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Brown, J. L., Carlstead, K., Bray, J. D. et al. 2019. Individual and environmental risk factors associated with fecal glucocorticoid metabolite concentrations in zoo-housed Asian and African elephants. PLOS ONE 14(9), e0217326.

A recent large-scale welfare study in North America involving 106 Asian (Elephas maximus) and 131 African (Loxodonta africana) elephants at 64 accredited facilities identified links (i.e., risk factors) between zoo environmental factors and a number...

Anderson, J. R., Ang, M. Y. L., Lock, L. C. et al. 2019. Nesting, sleeping, and nighttime behaviors in wild and captive great apes. Primates 60(4), 321–332.

The past few decades have seen a burgeoning of scientific studies on great apes’ use of nests for sleeping in the wild, as well as their nesting behavior and sleep in captivity. We review recent...

Scott, N. L., LaDue, C. A. 2019. The behavioral effects of exhibit size versus complexity in African elephants: A potential solution for smaller spaces. Zoo Biology 38(5), 448-457.

Population-level analyses suggest that habitat complexity, but not necessarily space availability, has important welfare outcomes for elephants in human care. At the Dallas Zoo, the opening of a new exhibit complex allowed us to measure...

Cox, R. J., Nol, P., Ellis, C. K. et al. 2019. Research with agricultural animals and wildlife. ILAR Journal 60(1), 66-73.

In fiscal year 2016, agricultural animals such as swine, sheep, goats, and cattle represented 10% of the 820 812 animals used in USDA-regulated research. In addition to traditional agricultural animals, research studies using captive wildlife...

Fischer, C. P., Romero, L. M. 2019. Chronic captivity stress in wild animals is highly species-specific. Conservation Physiology 7(1), coz093.

Wild animals are brought into captivity for many reasons—conservation, research, agriculture and the exotic pet trade. While the physical needs of animals are met in captivity, the conditions of confinement and exposure to humans can...

Phillips, K.A., Tukan, A. N., Rigodanzo, A. D. et al. 2018. Quantification of hair cortisol concentration in common marmosets (Callithrix jacchus) and tufted capuchins (Cebus apella). American Journal of Primatology 80(7), e22879.

Quantifying cortisol concentration in hair is a non‐invasive biomarker of long‐term hypothalamic‐pituitary‐adrenal (HPA) activation, and thus can provide important information on laboratory animal health. Marmosets (Callithrix jacchus) and capuchins (Cebus apella) are New World primates...

Neal Webb, S. J., Hau, J., Schapiro, S. J. 2018. Captive chimpanzee (Pan troglodytes) behavior as a function of space per animal and enclosure type. American Journal of Primatology 80(2), e22749.

Space per animal, or animal density, and enclosure type are important elements of functionally appropriate captive environments (FACEs) for chimpanzees. The National Institutes of Health (NIH) recommends that captive chimpanzees be maintained in areas of...

Schiffmann, C., Hoby, S., Wenker, C. et al. 2018. When elephants fall asleep: A literature review on elephant rest with case studies on elephant falling bouts, andpractical solutions for zoo elephants. Zoo Biology 37(3), 133–145.

Little attention has been paid to the resting and sleeping behavior of zoo elephants so far. An important concern is when elephants avoid lying down, due to degenerative joint and foot disease, social structure, or...

Neal Webb, S. J., Hau, J., Schapiro, S. J. 2018. A comparison of activity patterns of captive chimpanzees (Pan troglodytes) housed in primadomes™ or corrals. American Journal of Primatology 80(S1), 45-46 (40th Meeting of the American Society of Primatologists Scientific Program, Abstract #141).

Primadomes™ and corrals, two types of housing options available to captive chimpanzees, differ in several physical features, including closed (primadomes™) or open (corrals) tops, mesh (primadomes™) or concrete (corrals) walls, and available space per animal...

Rapp-Santos, K. J., Altamura, L. A., Norris, S. L. et al. 2017. Comparison of saliva collection methods for the determination of salivary cortisol levels in rhesus macaques (Macaca mulatta), cynomolgus macaques (Macaca fascicularis), and African green monkeys (Chlorocebus aethiops). JAALAS 56(2), 181-189.

The ability to quickly and accurately determine cortisol as a biomarker for stress is a valuable tool in assessing the wellbeing of NHP. In this study, 2 methods of collecting saliva (a commercial collection device...

McMillan, J. L., Bloomsmith, M. A., Prescott, M. J. 2017. An international survey of approaches to chair restraint of nonhuman primates. Comparative Medicine 67(5), 442–451.

Specifically designed restraint chairs are the preferred method of restraint for research studies that require NHP to sit in place for sustained periods of time. In light of increasing emphasis on refinement of restraint to...

Cooper, J. E., Hull, G. 2017. Gorilla Pathology and Health: With a Catalogue of Preserved Materials. Elsevier/Academic Print, London, UK.

Gorilla Pathology and Health: With a Catalogue of Preserved Materials consists of two cross-referenced parts. The first, the book itself, is a review of pathological changes and tissue responses in gorillas (Gorilla gorilla and G...

Holdgate, M. R., Meehan, C. L., Hogan, J. N. et al. 2016. Walking behavior of zoo elephants: Associations between GPS-measured daily walking distances and environmental factors, social factors, and welfare indicators. PLOS ONE 11(7), e0150331.

Research with humans and other animals suggests that walking benefits physical health. Perhaps because these links have been demonstrated in other species, it has been suggested that walking is important to elephant welfare, and that...

Holdgate, M. R., Meehan, C. L., Hogan, J. N. et al. 2016. Recumbence behavior in zoo elephants: Determination of patterns and frequency of recumbent rest and associated environmental and social factors. PLOS ONE 11(7), e0153301.

Resting behaviors are an essential component of animal welfare but have received little attention in zoological research. African savanna elephant (Loxodonta africana) and Asian elephant (Elephas maximus) rest includes recumbent postures, but no large-scale investigation...

Miller, M. A., Hogan, J. N., Meehan, C. L. 2016. Housing and demographic risk factors impacting foot and musculoskeletal health in African elephants [Loxodonta africana] and Asian elephants [Elephas maximus] in North American zoos. PLOS ONE 11(7), e0155223.

For more than three decades, foot and musculoskeletal conditions have been documented among both Asian [Elephas maximus] and African [Loxodonta africana] elephants in zoos. Although environmental factors have been hypothesized to play a contributing role...

Ross, S. R., Shender, M. A. 2016. Daily travel distances of zoo-housed chimpanzees and gorillas: Implications for welfare assessments and space requirements. Primates 57(3), 395-401.

The degree to which the relatively smaller area of artificial environments (compared with natural habitats) has measureable effects on the behavior and welfare of captive animals has been debated for many years. While there is...

Powell, D. M., Vitale, C. 2016. Behavioral changes in female Asian elephants when given access to an outdoor yard overnight. Zoo Biology 35(4), 298-303.

A study was conducted at the Bronx Zoo to determine whether providing elephants with access to an outdoor corral at night had any significant effects on behavior, use of space, and use of a sand...

O'Keefe, S. 2016. Non-human primate housing facility at Newcastle University. Animal Technology and Welfare 15(2), 131-132.

Monkeys first arrived in the Comparative Biology Centre (CBC) at Newcastle University in 2000. They were housed in three small separate units consisting of steel and wooden cages. In 2011 a decision was made to...

Caron, A., Lelong, C., Pascual, M. H. et al. 2015. Miniaturized blood sampling techniques to benefit reduction in mice and refinement in nonhuman primates: Application to bioanalysis in toxicity studies with antibody-drug conjugates. JAALAS 54(2), 145-152.

Minimizing the number of animals in regulatory toxicity studies while achieving study objectives to support the development of future medicines contributes to good scientific and ethical practices. Recent advances in technology have enabled the development...

Bloomsmith, M., Kim, N., Franklin, A. et al. 2015. Positive reinforcement methods to train chimpanzees to cooperate with urine collection. JAALAS 54, 66-69.

Positive reinforcement training can be used in many ways to enhance the welfare of captive primates. Training for biologic sample collection is one application of positive reinforcement training. In this study, 35 adult female chimpanzees...

Bayne, K. A., Beaver, B. V., Mench, J. A. et al. 2015. Laboratory animal behavior. In: Laboratory Animal Medicine, 3rd edition. Fox, J. G., Anderson, L., Otto, G., et al. (eds). Elsevier, Inc., Amsterdam, NL. pp. 1617-1651.

The study of laboratory animal behavior has increased steadily over the last decade, with expanding emphasis on a variety of commonly used species. In the United States, this trend was initially focused on species for...

Reamer, L. A., Haller, R. H., Thiele, E. J. et al. 2014. Factors affecting initial training success of blood glucose testing in captive chimpanzees (Pan troglodytes). Zoo Biology 33(3), 212-220.

Type 2 diabetes can be a problem for captive chimpanzees. Accurate blood glucose (BG) readings are necessary to monitor and treat this disease. Thus, obtaining voluntary samples from primates through positive reinforcement training (PRT) is...

Kurtycz, L. M., Wagner, K. E., Ross, S. R. 2014. The choice to access outdoor areas affects the behavior of great apes. Journal of Applied Animal Welfare Science 17(3), 185–197.

Outdoor access is often cited as a critical component of appropriate housing for great apes in captivity, and although studies have shown that offering primates choices can improve welfare, choice to access specific areas has...

Reinhardt, V. (ed.) 2013. Compassion Makes a Difference - Discussions by the Laboratory Animal Refinement & Enrichment Forum [LAREF], Volume III. Animal Welfare Institute, Washington, DC.

This is the third volume of discussions that took place on the Laboratory Animal Refinement & Enrichment Forum (LAREF). This forum is dedicated to the exchange of personal experiences of refining the conditions under which...

Hrapkiewicz, K., Colby, L. A., Denison, P. 2013. Clinical Laboratory Animal Medicine: An Introduction (4th Ed). Wiley-Blackwell, Ames, IA.

Clinical Laboratory Animal Medicine: An Introduction, Fourth Edition offers a user-friendly guide to the unique anatomy and physiology, care, common diseases, and treatment of small mammals and nonhuman primates. Carefully designed for ease of use...