Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Schneidewind, S. J., Meemken, D., Langforth, S. 2023. Measures and penalties for animal welfare violations at german abattoirs: A compilation of current recommendations and practices. Animals 13(18), 2916.

Protecting animal welfare during preslaughter handling and slaughter is an important ethical concern with growing importance to consumers. However, animal welfare violations in abattoirs remain a serious problem, and the enforcement of relevant laws and...

Turcu, M.-C., Paștiu, A. I., Bel, L.-V. et al. 2023. Minimally invasive sampling methods for molecular sexing of wild and companion birds. Animals 13(21), 3417.

Birds are highly social and must be paired in order to increase their welfare. Most bird species are monomorphic; therefore, molecular sexing helps provide appropriate welfare for birds. Moreover, early sex determination can be of...

Böswald, L. F., Matzek, D., Mohr, H. et al. 2022. Morphometrics of Xenopus laevis kept as laboratory animals. Animals 12(21), 2986.

Morphometric data that provide information on body conditions can be used to monitor the health and well-being of animals. In laboratory animals, they can help to evaluate the stress due to experiments or treatments, following...

Mumm, L. E., Mans, C. 2022. Evaluation of dexmedetomidine-midazolam sedation in budgerigars (Melopsittacus undulatus). Journal of the American Veterinary Medical Association 260(10), 1194–1199.

OBJECTIVE To evaluate the sedative effects of IM administration of a high or low dose of dexmedetomidine in combination with midazolam in budgerigars (Melopsittacus undulatus). ANIMALS 20 healthy adult budgerigars. PROCEDURES In a prospective, randomized...

Anderson, J., Kaplan-Stein, S., Adolph, S. et al. 2020. Assessment of non-contact infrared thermometer measurement sites in birds. Journal of Applied Animal Welfare Science 23(2), 131-139.

The standard method of obtaining body temperature in a bird can be a stressful event, making routine evaluations challenging. Twenty-eight privately owned birds in good health were enrolled in the study to compare digital and...

Reese, L., Ladwig-Wiegard, M., von Fersen, L. et al. 2020. Deflighting zoo birds and its welfare considerations. Animal Welfare 29(1), 69-80.

For over a century, the practice of deflighting has taken place in zoological collections in order to ensure birds remain in open-topped enclosures. Over time, efforts have been made to improve or develop new (surgical)...

Boers, K. L., Allender, M. C., Novak, L. J. et al. 2020. Assessment of hematologic and corticosterone response in free-living eastern box turtles (Terrapene carolina carolina) at capture and after handling. Zoo Biology 39(1), 13-22.

Hematology is a common tool for wildlife health assessments. Manual leukocyte counts are required in reptiles, however, disagreement between quantification methods has been observed in some chelonians. This study determined agreement between two methods of...

Nawroth, C., Gygax, L. 2020. The legislative, ethical, and conceptual importance of replicability in farm animal welfare science. agriRxiv 2020, 20203211980.

In this commentary, we discuss three replicability issues that are specifically relevant to research regarding farm animal welfare: (1) Legislative action, and its potential economic consequences, should derive from robust and replicable research to benefit...

Moyano Barbosa, H., Gama Nogueira-Filho, S. L., Nogueira de Morais, R. et al. 2019. Non-invasive stress monitoring and temperament of chestnut-bellied seed-finch (Passeriformes, Thraupidae). Applied Animal Behaviour Science 220, 104859.

Songbirds are kept as pets around the world, and bird-singing contests occur in several countries. However, there is a lack of scientific support for songbird welfare and stress monitoring. Thus, we aimed to validate the...

Baker, S. W., Tucci, E. R., Felt, S. A. et al. 2019. A bird's-eye view of regulatory, animal care, and training considerations regarding avian flight research. Comparative Medicine 69(3), 169–178.

A thorough understanding of how animals fly is a central goal of many scientific disciplines. Birds are a commonly used model organism for flight research. The success of this model requires studying healthy and naturally...

Balko, J. A., Lindemann, D. M., Allender, M. C. et al. 2019. Evaluation of the anesthetic and cardiorespiratory effects of intramuscular alfaxalone administration and isoflurane in budgerigars (Melopsittacus undulatus) and comparison with manual restraint. Journal of the American Veterinary Medical Association 254(12), 1427-1435.

OBJECTIVE To evaluate the anesthetic and cardiorespiratory effects of IM alfaxalone and isoflurane administration in budgerigars (Melopsittacus undulatus) and compare use of these agents with use of manual restraint. ANIMALS 42 healthy budgerigars. PROCEDURES For...

Colby, L. A., Nowland, M. H., Kennedy, L. H. 2019. Clinical Laboratory Animal Medicine: An Introduction (5th ed). Wiley-Blackwell, Ames, IA.

The revised fifth edition of Clinical Laboratory Animal Medicine: An Introduction is an accessible guide to basic information for conducting animal research safely and responsibly. It includes a review of the unique anatomic and physiologic...

Andrianov, E. A., Sudakov, A. N., Andrianov, A. A. et al. 2019. Non-invasive monitoring of avian embryo heart rate. Journal of Animal Behaviour and Biometeorology 7(3), 119-122.

Non-invasive monitoring of the heart rate allows measuring the condition of the chick embryo in the incubation process without negative consequences for the future chick. The optical method for registering heartbeats is available to a...

Carter, E. 2018. Updated Code of Practice for the welfare of meat chickens and meat breeding chickens in England. Animal Welfare 27(2), 181-185.

Much of the content in the 2018 Code is similar to that found in previous guidance documents: the 2002 Code of Practice for the Welfare of Meat Chickens and Meat Breeding Chickens, and the 2011...

Smith, B. D., Vail, K. J., Carroll, G. L. et al. 2018. Comparison of etomidate, benzocaine, and MS222 anesthesia with and without subsequent flunixin meglumine analgesia in African clawed frogs (Xenopus laevis). JAALAS 57(2), 202-209.

Often few alternative anesthetics for exotic species are available, due to the small numbers of these animals used in research. In this study, we evaluated the depth and duration of anesthesia in Xenopus laevis after...

Unakafov, A. M., Möller, S., Kagan, I. et al. 2018. Using imaging photoplethysmography for heart rate estimation in non-human primates. PLOS ONE 13(8), e0202581.

For humans and for non-human primates heart rate is a reliable indicator of an individual’s current physiological state, with applications ranging from health checks to experimental studies of cognitive and emotional state. In humans, changes...

Chatigny, F., Kamunde, C., Creighton, C. M. et al. 2017. Uses and doses of local anesthetics in fish, amphibians, and reptiles. JAALAS 56(3), 244-253.

Local anesthetics are an integral part of routine pain management in mammals, yet their use is relatively limited in fish, amphibians and reptiles. These animals frequently undergo potentially painful surgical procedures and therefore could possibly...

Phillips, B. E., Posner, L. P., Lewbart, G. A. et al. 2017. Effects of alfaxalone administered intravenously to healthy yearling loggerhead sea turtles (Caretta caretta) at three different doses. Journal of the American Veterinary Medical Association 250(8), 909-917.

OBJECTIVE To compare physiologic and anesthetic effects of alfaxalone administered IV to yearling loggerhead sea turtles (Caretta caretta) at 3 different doses. DESIGN Randomized crossover study. ANIMALS 9 healthy yearling loggerhead sea turtles. PROCEDURES Animals...

National Health and Medical Research Council [NHMRC]. 2016. Principles and guidelines for the care and use of non-human primates for scientific purposes. National Health and Medical Research Council: Canberra, Australia, 25 pp.

The Principles and guidelines for the care and use of non-human primates for scientific purposes is a revision of NHMRC’s Policy on the care and use of non-human primates for scientific purposes 2003 (the Policy)...

Morrison, K.E., Strahl-Heldreth, D. Clark-Price, S.C. 2016. Isoflurane, sevoflurane and desflurane use in cane toads (Rhinella marina). Veterinary Record Open 3(1), e000185.

Anaesthetic chamber concentrations of isoflurane, sevoflurane and desflurane that resulted in loss of righting reflex within 15 minutes in 50 per cent of toads (Rhinella marina) exposed (ED50-LRR

Pizzi, R., Dowling, A., Brown, D. et al. 2015. Facial thermography is not useful in assessing body temperature in common squirrel monkeys (Saimiri sciureus) in comparison to rectal temperatures. Journal of Zoo and Aquarium Research 3(3), 94-98.

A group of 39 captive common squirrel monkeys (Saimiri sciureus) had their body temperature measurements compared by rectal thermometry and facial infrared thermal imaging (Flir i3, Flir Systems Inc). Squirrel monkeys were caught up and...

Nääs, I. A., Garcia, R. G., Caldara, F. R. 2015. Infrared thermal image for assessing animal health and welfare. Journal of Animal Behaviour and Biometeorology 2(3), 66-72.

Infrared thermal imaging is a non-destructive testing technology that can be used to determine the superficial temperature of objects. This technology has an increasing use in detecting diseases and distress in animal husbandry within the...

Hrapkiewicz, K., Colby, L. A., Denison, P. 2013. Clinical Laboratory Animal Medicine: An Introduction (4th Ed). Wiley-Blackwell, Ames, IA.

Clinical Laboratory Animal Medicine: An Introduction, Fourth Edition offers a user-friendly guide to the unique anatomy and physiology, care, common diseases, and treatment of small mammals and nonhuman primates. Carefully designed for ease of use...

Taylor K. 2010. Reporting the implementation of the three Rs in European primate and mouse research papers: Are we making progress? Alternatives to Laboratory Animals 38(6), 495-517.

It is now more than 20 years since both Council of Europe Convention ETS123 and EU Directive 86/609/EEC were introduced, to promote the implementation of the Three Rs in animal experimentation and to provide guidance...

Canadian Council on Animal Care. 2009. CCAC guidelines on: the care and use of farm animals in research, teaching and testing. Ottawa, Canada.

These guidelines aim to provide information for investigators, animal care committees, facility managers and animal care staff that will assist in improving both the care given to farm animals and the manner in which experimental...