Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Eichner, M., Garcia, K. 2019. Increase in morbidity and mortality in a shipment of red-eared slider turtles (Trachemys scripta elegans). Laboratory Animals 53(6), 634–640.

A cohort of captive-bred red-eared slider turtles, Trachemys scripta, was received from a commercial vendor. Shortly after arrival, several turtles presented as lethargic with subjectively pale skin and multifocal areas of cotton-like tufts in the...

Yon, L., Williams, E., Harvey, N. D. et al. 2019. Development of a behavioural welfare assessment tool for routine use with captive elephants. PLOS ONE 14(2), e0210783.

There has been much concern in recent years about the welfare of elephants in zoos across North America and Europe. While some previous studies have assessed captive elephant welfare at a particular point in time...

Egelkamp, C. L., Ross, S. R. 2019. A review of zoo-based cognitive research using touchscreen interfaces. Zoo Biology 38(2), 220-235.

In the past few decades, there has been an increase in the number of zoo-based touchscreen studies of animal cognition around the world. Such studies have contributed to the field of comparative cognition despite the...

Message, R., Greenhough, B. 2019. “But it’s just a fish”: Understanding the challenges of applying the 3Rs in laboratory aquariums in the UK. Animals 9(12), 1075.

Adopting a social science perspective and qualitative methodology on the problem of laboratory fish welfare, this paper examines some underlying social factors and drivers that influence thinking, priorities and implementation of fish welfare initiatives and...

McMillan, F. D. (ed). 2019. Mental Health and Well-being in Animals (2nd ed). CABI, Wallingford, UK.

This second edition is fully revised, expanded, and comprehensively updated with the most current knowledge about the full array of mental health issues seen in animals. Written by key opinion leaders, internationally-recognized experts and specialists...

Williams, E., Chadwick, C. L., Yon, L. et al. 2018. A review of current indicators of welfare in captive elephants (Loxodonta africana and Elephas maximus). Animal Welfare 27(3), 235-249.

Concerns over elephant welfare in UK zoos have implications for their future in captivity. To monitor improvements made to elephant welfare in UK zoos, non-invasive, valid and reliable indicators of welfare are needed. Using a...

Clegg, I. 2018. Cognitive bias in zoo animals: An optimistic outlook for welfare assessment. Animals 8(7), 104.

Cognitive bias testing measures how emotional states can affect cognitive processes, often described using the “glass half-full/half-empty” paradigm. Classical or operant conditioning is used to measure responses to ambiguous cues, and it has been reported...

Wolfensohn, S., Shotton, J., Bowley, H. et al. 2018. Assessment of welfare in zoo animals: Towards optimum quality of life. Animals 8(7), 110.

Zoos are required to maintain a high standard of animal welfare, and this can be assessed using a combination of resource-based and animal-based indices usually divided into behavioural indicators, physiological indicators and clinical/pathological signs. Modern...

Chotard, H., Ioannou, S., Davila-Ross, M. 2018. Infrared thermal imaging: Positive and negative emotions modify the skin temperatures of monkey and ape faces. American Journal of Primatology 80(5), e22863.

Facial thermography has enabled researchers to noninvasively and continuously measure the changes of a range of emotional states in humans. The present work used this novel technology to study the effect of positive and negative...

Hall, K., Bryant, J., Whitham, J. et al. 2018. Validating WelfareTrak® as a tool to improve the welfare of individual chimpanzees. American Journal of Primatology 80(S1), 33 (40th Meeting of the American Society of Primatologists Scientific Program, Abstract #68).

WelfareTrak® is a web application that gives animal care specialists the opportunity to complete weekly species‐specific surveys to monitor positive and negative indicators of welfare for individual animals. WelfareTrak® generates reports and “flags” potential shifts...

Bloomsmith, M. A., Lambeth, S., Lutz, C. et al. 2018. Welfare measures for laboratory chimpanzees in the United States. American Journal of Primatology 80(S1), 46-47 (40th Meeting of the American Society of Primatologists Scientific Program, Abstract #145).

Behavioral assessment is an essential element of chimpanzee care. Behavioral data were compiled from four chimpanzee laboratory facilities (N = 522; 286 females, 236 males) using differing methods of assessment including quantitative data collection, animal...

Unakafov, A. M., Möller, S., Kagan, I. et al. 2018. Using imaging photoplethysmography for heart rate estimation in non-human primates. PLOS ONE 13(8), e0202581.

For humans and for non-human primates heart rate is a reliable indicator of an individual’s current physiological state, with applications ranging from health checks to experimental studies of cognitive and emotional state. In humans, changes...

Cronin, K. A., Bethell, E. J., Jacobson, S. L. et al. 2018. Evaluating mood changes in response to anthropogenic noise with a response-slowing task in three species of zoo-housed primates. Animal Behavior and Cognition 5(2), 209–221.

In the zoo environment, anthropogenic noise is common as sound levels fluctuate due to visitors, construction, habitat design, and special events. In this study, changes in the mood of three species of zoo-housed primates in...

Morfeld, K. A., Brown, J.L. 2017. Metabolic health assessment of zoo elephants: Management factors predicting leptin levels and the glucose-to-insulin ratio and their associations with health parameters. PLOS ONE 12(11), e0188701.

Screening for metabolic-related health problems can enhance animal welfare, so the purpose of this study was to conduct the first metabolic health assessment of zoo elephants and use epidemiological methods to determine how factors in...

Chadwick, C. L., Williams, E., Asher, L. et al. 2017. Incorporating stakeholder perspectives into the assessment and provision of captive elephant welfare. Animal Welfare 26(4), 461-472.

Recent concerns over the welfare of elephants in UK zoos have implications for their future in captivity, and it is clear that improvements in welfare should be made. Evidence suggests that the knowledge of experienced...

Krebs, B. L., Torres, E., Chesney, C. et al. 2017. Applying behavioral conditioning to identify anticipatory behaviors. Journal of Applied Animal Welfare Science 20(2), 155-175.

The ability to predict regular events can be adaptive for nonhuman animals living in an otherwise unpredictable environment. Animals may exhibit behavioral changes preceding a predictable event; such changes reflect anticipatory behavior. Anticipatory behavior is...

Moszuti, S. A., Wilkinson, A., Burman, O. H. P. 2017. Response to novelty as an indicator of reptile welfare. Applied Animal Behaviour Science 193, 98-103.

Whilst a great deal of research has been focused on identifying ways to assess the welfare of captive mammals and birds, there is comparatively little knowledge on how reptilian species are affected by captivity, and...

Robinson, L. M., Altschul, D. M., Wallace, E. K. et al. 2017. Chimpanzees with positive welfare are happier, extraverted, and emotionally stable. Applied Animal Behaviour Science 191, 90-97.

Facilities housing captive animals are full of staff who, every day, interact with the animals under their care. The expertise and familiarity of staff can be used to monitor animal welfare by means of questionnaires...

Schiffmann, C., Clauss, M., Hoby, S. et al. 2017. Visual body condition scoring in zoo animals – Composite, algorithm and overview approaches. Journal of Zoo and Aquarium Research 5(1), 1-10.

Various body condition scoring (BCS) methods have been developed as management tools in zoo animal husbandry. In contrast to BCS for farm animals, where visual and palpable features are used, these protocols are mainly restricted...

Monreal-Pawlowsky, T., Marco-Cabedo, V., Manteca, X. et al. 2017. Environmental enrichment facilitates release and survival of an injured loggerhead sea turtle (Caretta caretta) after ten years in captivity. Journal of Zoo and Aquarium Research 5(4), 182-186.

In June 2006 a loggerhead sea turtle (Caretta caretta) was admitted to a rescue centre on the Mediterranean coast with severe fishing net entanglement in its fore right flipper. The flipper could not be saved...

Yamanashi, Y., Teramoto, M., Morimura, N. et al. 2016. Effects of relocation and individual and environmental factors on the long-term stress levels in captive chimpanzees (Pan troglodytes): Monitoring hair cortisol and behaviors. PLOS ONE 11(7), e0160029.

Understanding the factors associated with the long-term stress levels of captive animals is important from the view of animal welfare. In this study, we investigated the effects of relocation in addition to individual and environmental...

Wark, J. D., Amendolagine, L., Lukas, K. E. et al. 2016. Fecal glucocorticoid metabolite responses to management stressors and social change in four species of callitrichine monkeys. Primates 57(2), 267-277.

The use of enzyme immunoassays (EIA) for the non-invasive measurement of glucocorticoids provides a valuable tool for monitoring health and welfare in sensitive species. We validated methods for measuring fecal glucocorticoid metabolites (FGM) using the...

Sneddon, L. U., Elwood, R. W., Adamo, S. A. et al. 2014. Defining and assessing animal pain. Animal Behaviour 97, 201-212.

The detection and assessment of pain in animals is crucial to improving their welfare in a variety of contexts in which humans are ethically or legally bound to do so. Thus clear standards to judge...

Burlingame, L. A., Na, J., Dunbar, M. et al. 2014. Behavioral ethogram as a health assessment tool in a feline vaccine study. American Association for Laboratory Animal Science [AALAS] Meeting Official Program, 610. (Abstract #P227).

For infectious disease studies, assessment of feline health is traditionally limited to metrics such as body temperature (BT), change in body weight (BW), and clinical signs (CS). Recently, behavioral ethograms designed for assessment of rabbits...

Kranendonk, G., Schippers, E. P. 2014. A pilot study on the effects of a change in behavioural management on the behaviour of captive chimpanzees (Pan troglodytes). Applied Animal Behaviour Science 160, 127-137.

The debate on the use of chimpanzees (Pan troglodytes) in biomedical research has been ongoing for several years now. In 2012, the decision was made to retire a large number of laboratory chimpanzees in the...