Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
ur Rahman, M. A., Xia, C., Ji, L. et al. 2019. Nutrient intake, feeding patterns, and abnormal behavior of growing bulls fed different concentrate levels and a single fiber source (corn stover silage). Journal of Veterinary Behavior 33, 46-53.

Twenty-eight bulls weighing 227 ± 6.8 (SD) kg were randomly assigned to four concentrate levels (1-1.5 kg [low level of concentrate {LC}], 1.5-2 kg [medium level of concentrate], 2-2.5 kg [high level of concentrate {HC}]...

Eichner, M., Garcia, K. 2019. Increase in morbidity and mortality in a shipment of red-eared slider turtles (Trachemys scripta elegans). Laboratory Animals 53(6), 634–640.

A cohort of captive-bred red-eared slider turtles, Trachemys scripta, was received from a commercial vendor. Shortly after arrival, several turtles presented as lethargic with subjectively pale skin and multifocal areas of cotton-like tufts in the...

Gilliam, J. N., Woods, J., Hill, J. et al. 2018. Evaluation of the CASH Dispatch Kit combined with alternative shot placement landmarks as a single-step euthanasia method for cattle of various ages. Animal Welfare 27(3), 225-233.

Humane euthanasia of cattle under field conditions presents special challenges for veterinarians and producers. The purpose of this study was to evaluate the effectiveness of the CASH Dispatch Kit captive-bolt system combined with improved shot...

Shearer, J. 2018. Euthanasia of cattle: Practical considerations and application. Animals 8(4), 57.

Acceptable methods for the euthanasia of cattle include overdose of an anesthetic, gunshot and captive bolt. The use of anesthetics for euthanasia is costly and complicates carcass disposal. These issues can be avoided by use...

Witaifi, A. A., Ali, A. B. A., Siegford, J. M. 2018. Stall and feed bunk stocking rates impact cows' diurnal behavior and activity in automatic milking system farms. Journal of Veterinary Behavior 24, 48-55.

High stall stocking rates have been shown to alter behavior of cows in parlor-milked systems; however, no studies have examined stocking rates for cows milked with automatic milking systems (AMSs). Therefore, we examined the influence...

Schiffer, K. J., Retz, S. K., Algers, B. 2017. Assessment of stun quality after gunshot used on cattle: a pilot study on effects of diverse ammunition on physical signs displayed after the shot, brain tissue damage and brain haemorrhages. Animal Welfare 26(1), 95-109.

Moving the slaughter process from the abattoir to the animals' familiar environment has the potential to reduce pre-mortal stressors to a minimum and contribute considerably to improved animal welfare at slaughter. On-farm stunning and killing...

Monreal-Pawlowsky, T., Marco-Cabedo, V., Manteca, X. et al. 2017. Environmental enrichment facilitates release and survival of an injured loggerhead sea turtle (Caretta caretta) after ten years in captivity. Journal of Zoo and Aquarium Research 5(4), 182-186.

In June 2006 a loggerhead sea turtle (Caretta caretta) was admitted to a rescue centre on the Mediterranean coast with severe fishing net entanglement in its fore right flipper. The flipper could not be saved...

Flint, M., Mills, P. C., Loban, F. et al. 2017. Development of a humane slaughter device for green turtles for use by traditional owners in the Torres Strait Islands, Australia. PLOS ONE 12(1), e0167849.

Marine turtles are caught and slaughtered for consumption as part of traditional indigenous community harvest in Australia as well as in many countries in which marine turtles can be found. However, changes to the Animal...

Gilliam, J. N., Shearer, J. K., Bahr, R. J. et al. 2016. Evaluation of brainstem disruption following penetrating captive-bolt shot in isolated cattle heads: comparison of traditional and alternative shot-placement landmarks. Animal Welfare 25(3), 347-353.

Currently recommended landmarks for captive-bolt euthanasia of cattle often result in failure to penetrate the brainstem. The purpose of this study was to evaluate the ability to disrupt the brainstem by placing the shot at...

Kanghae, H., Thongprajukaew, K., Jatupornpitukchat, S. et al. 2016. Optimal?rearing density for head?starting green turtles (Chelonia mydas Linnaeus, 1758). Zoo Biology 35(5), 454-461.

While ex situ conservation programs of juvenile green turtles (Chelonia mydas Linnaeus, 1758), before release to natural habitats, have been conducted in several countries, the optimal‐stocking density for husbandry has not yet been reported. The...

Reinhardt, V. (ed.) 2013. Compassion Makes a Difference - Discussions by the Laboratory Animal Refinement & Enrichment Forum [LAREF], Volume III. Animal Welfare Institute, Washington, DC.

This is the third volume of discussions that took place on the Laboratory Animal Refinement & Enrichment Forum (LAREF). This forum is dedicated to the exchange of personal experiences of refining the conditions under which...

Melfi, V. 2013. Is training zoo animals enriching? Applied Animal Behaviour Science 147, 299-305.

Husbandry training of zoo animals (training) has been associated with many benefits, and indisputably is a valuable tool; training facilitates movement of animals within their environment, and participation in husbandry and medical procedures. Training has...

Lambeth, S. P., Schapiro, S. J., Bernacky, B. J. et al. 2013. Establishing 'quality of life' parameters using behavioural guidelines for humane euthanasia of captive non-human primates. Animal Welfare 22(4) 429-435.

Chronic pain and distress are universally accepted conditions that may adversely affect an animal’s quality of life (QOL) and lead to the humane euthanasia of an animal. At most research institutions and zoological parks in...

Warwick, C., Arena, P., Lindley, S. et al. 2013. Assessing reptile welfare using behavioural criteria. In Practice 35(3), 123-131.

While clinical reptile medicine as a science is in its ascendancy among veterinary surgeons and other interested groups, familiarity with the often related issue of reptilian behavioural and psychological health appears less common. Behavioural change...

Perlman, J. E., Bloomsmith, M. A., Whittaker, M. A. et al. 2012. Implementing positive reinforcement animal training programs at primate laboratories. Applied Animal Behaviour Science 137(3-4), 114-126.

In the last decade several surveys of primate care and training programs highlight a common theme; despite scientific evidence that animal training can be effective in reducing stress, increasing efficiency and improving veterinary care, animal...

Coleman, K. 2012. Individual differences in temperament and behavioral management practices for nonhuman primates. Applied Animal Behaviour Science 137(3-4), 106-113.

This review will examine how individual differences in temperament might affect, or be affected by, behavioral management practices for captive primates. Measuring temperament may help us predict the outcome of social introductions. It can also...

Watts, A. 2010. Thinking outside the box in box training. Tech Talk [The Newsletter for Laboratory Animal Science Technicians] 15(2), 3.

At the Oregon National Primate Research Center, we train animals to enter transfer boxes using positive reinforcement training (PRT), a type of training in which the trainer reinforces desired behaviors (such asentering the transfer box)...

Moreau, E. 2010. To squeeze or not to squeeze? A Discussion on LAREF, September, 2009. Laboratory Primate Newsletter 49(2), 3-4.

The discussion was started by the following questions: "Is the squeeze-back mechanism more or less stressful than the pole and collar system for removing a macaque from his cage for an IM (intramuscular) injection?" and...

Lee, S., Su, H. 2009. Applications of positive reinforcement training in captive orangutans (Pongo pygmaeus) and Taiwanese macaques (Macaca cyclopsis). American Journal of Primatology 71(S1), 34. (32nd Meeting of the American Society of Primatologists Scientific Program, Abstract #16)

PRT is a good way of shaping the behavior of captive animals and doing so can make the animals less stressed to promote their well being. PRT is commonly used by captive animal organizations in...

McMillan, J. L., Perlman, J. E., Bloomsmith, M. A. 2007. Components of an animal training program at a large institution. American Journal of Primatology 69(S1), 117. (30th Meeting of the American Society of Primatologists Scientific Program, Abstract #177)

The application of positive reinforcement training (PRT) has increased in zoological, laboratory, and research settings in recent years, however there is little literature pertaining to the development and implementation of such programs. Over the past...

Conour, L. A., Murray, K. A., Brown, M. J. 2006. Preparation of animals for research -- Issues to consider for rodents and rabbits. ILAR Journal 47(4), 283-293.

This article provides details to consider when preparing to use animals in biomedical research. The stress of transport and receipt of animals into a new environment mandate the need for a period of stabilization and...

Reinhardt, V. 1997. Training nonhuman primates to cooperate during handling procedures: A review. Animal Technology 48, 55-73.

Twenty-six reports provide detailed information of how primates can be trained to voluntarily cooperate - rather than resist - during blood collection, injection, topical drug application, blood pressure measurement, urine collection, and capture.

Reinhardt, V. 1994. Traditional handling procedures of laboratory nonhuman primates are an intrinsic source of distress: What can be done? In Touch 1(4), 1 & 6-7.

With some professional expertise and goodwill, there should be no real need to resort to forceful restraint when doing research with nonhuman primates.

Laule, G. E. 1992. Use of positive behavioral techniques in primates for husbandry and enrichment. The Newsletter 3(4), 1-2.

Primates, as a group, offer great opportunities for positive reinforcement work.