Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Moyano Barbosa, H., Gama Nogueira-Filho, S. L., Nogueira de Morais, R. et al. 2019. Non-invasive stress monitoring and temperament of chestnut-bellied seed-finch (Passeriformes, Thraupidae). Applied Animal Behaviour Science 220, 104859.

Songbirds are kept as pets around the world, and bird-singing contests occur in several countries. However, there is a lack of scientific support for songbird welfare and stress monitoring. Thus, we aimed to validate the...

Lambert, H., Carder, G. 2019. Positive and negative emotions in dairy cows: Can ear postures be used as a measure? Behavioural Processes 158, 172-180.

Applying objective measures to assess the emotional states of animals is an important area of research and essential for improving animal welfare. In this study, we have built upon previous research to test whether ear...

Eichner, M., Garcia, K. 2019. Increase in morbidity and mortality in a shipment of red-eared slider turtles (Trachemys scripta elegans). Laboratory Animals 53(6), 634–640.

A cohort of captive-bred red-eared slider turtles, Trachemys scripta, was received from a commercial vendor. Shortly after arrival, several turtles presented as lethargic with subjectively pale skin and multifocal areas of cotton-like tufts in the...

Ross, M., Garland, A., Harlander-Matauschek, A. et al. 2019. Welfare-improving enrichments greatly reduce hens' startle responses, despite little change in judgment bias. Scientific Reports 9, 11881.

Responses to ambiguous and aversive stimuli (e.g. via tests of judgment bias and measures of startle amplitude) can indicate mammals’ affective states. We hypothesised that such findings generalize to birds, and that these two responses...

Bučková, K., Špinka, M., Hintze, S. 2019. Pair housing makes calves more optimistic. Scientific Reports 9, 20246.

Individual housing of dairy calves is common farm practice, but has negative effects on calf welfare. A compromise between practice and welfare may be housing calves in pairs. We compared learning performances and affective states...

Jorquera-Chavez, M., Fuentes, S., Dunshea, F. et al. 2019. Modelling and validation of computer vision techniques to assess heart rate, eye temperature, ear-base temperature and respiration rate in cattle. Animals 9(12), 1089.

Precision livestock farming has emerged with the aim of providing detailed information to detect and reduce problems related to animal management. This study aimed to develop and validate computer vision techniques to track required features...

McMillan, F. D. (ed). 2019. Mental Health and Well-being in Animals (2nd ed). CABI, Wallingford, UK.

This second edition is fully revised, expanded, and comprehensively updated with the most current knowledge about the full array of mental health issues seen in animals. Written by key opinion leaders, internationally-recognized experts and specialists...

Machado, M., Oliveira da Silva, I. J. 2019. Does farm animals experience emotions and feelings? Journal of Animal Behaviour and Biometeorology 7(4), 170-175.

In recent years, there has been a great increase in the interest of "emotion" and how it can be studied and translated from animals. Emotions arise when the brain receives an external stimulus, while the...

Andrianov, E. A., Sudakov, A. N., Andrianov, A. A. et al. 2019. Non-invasive monitoring of avian embryo heart rate. Journal of Animal Behaviour and Biometeorology 7(3), 119-122.

Non-invasive monitoring of the heart rate allows measuring the condition of the chick embryo in the incubation process without negative consequences for the future chick. The optical method for registering heartbeats is available to a...

Carvalho, C. da C. S., Cordeiro de Souza, A., Ferreira, H. C. et al. 2019. Using infrared thermography to measure the body surface temperature of crossbred cows and calves in the semi-arid region of Minas Gerais, Brazil. Journal of Animal Behaviour and Biometeorology 7(3), 132-136.

This study aimed to evaluate the body surface temperature of crossbreed cows and calves managed in the semi-arid region of Minas Gerais (Brazil), using the infrared thermography technique. The thermal environment was characterized by daily...

Špinka, M. 2019. Animal agency, animal awareness and animal welfare. Animal Welfare 28(1), 11–20.

In nature, animals need to actively engage with the environment in order to prosper in survival and reproduction. Hence, agency is a central adaptive characteristic of animal life. In this paper, I propose that from...

Baker, S., Knight, E., Pellett, S. et al. 2018. Spider and chips: The use of internal Radio Frequency Identification (RFID) chips as a minimally invasive method to measure internal body temperatures in invertebrates. Animal Technology and Welfare 17(1), 1-7.

Internal RFID transponders have been used in vertebrates for many years, however studies into their use in invertebrates are less well represented in the literature. The use of RFID transponders for internal temperature measurement represents...

Paul, E. S., Edgar, J. L., Caplen, G. et al. 2018. Examining affective structure in chickens: valence, intensity, persistence and generalization measured using a Conditioned Place Preference Test. Applied Animal Behaviour Science 207, 39-48.

When measuring animals’ valenced behavioural responses to stimuli, the Conditioned Place Preference (CPP) test goes a step further than many approach-based and avoidance-based tests by establishing whether a learned preference for, or aversion to, the...

Bertin, A., Cornilleau, F., Lemarchand, J. et al. 2018. Are there facial indicators of positive emotions in birds? A first exploration in Japanese quail. Behavioural Processes 157, 470-473.

The positive aspect of emotions, like pleasure, remains overlooked in birds. Our aim was to contribute to the exploration of facial indicators of positive emotions. To observe contrasting emotional expressions, we used two lines of...

Unakafov, A. M., Möller, S., Kagan, I. et al. 2018. Using imaging photoplethysmography for heart rate estimation in non-human primates. PLOS ONE 13(8), e0202581.

For humans and for non-human primates heart rate is a reliable indicator of an individual’s current physiological state, with applications ranging from health checks to experimental studies of cognitive and emotional state. In humans, changes...

Lopes, V. M., Sampaio, E., Roumbedakis, K. et al. 2017. Cephalopod biology and care, a COST FA1301 (CephsInAction) training school: Anaesthesia and scientific procedures. Invertebrate Neuroscience 17, 8.

Cephalopods are the sole invertebrates included in the list of regulated species following the Directive 2010/63/EU. According to the Directive, achieving competence through adequate training is a requisite for people having a role in the...

Monreal-Pawlowsky, T., Marco-Cabedo, V., Manteca, X. et al. 2017. Environmental enrichment facilitates release and survival of an injured loggerhead sea turtle (Caretta caretta) after ten years in captivity. Journal of Zoo and Aquarium Research 5(4), 182-186.

In June 2006 a loggerhead sea turtle (Caretta caretta) was admitted to a rescue centre on the Mediterranean coast with severe fishing net entanglement in its fore right flipper. The flipper could not be saved...

Hill, H. M. 2017. The psychology of cows? A case of over-interpretation and personification. Animal Behavior and Cognition 4(4), 506–511.

Reviews of existing literature on topics that have been neglected, such as the subject of the cognitive and affective abilities of cows, are productive and necessary exercises in science (Elwen, Findlay, Kiszka, & Weir, 2011...

Marino, L. 2017. Thinking chickens: A review of cognition, emotion, and behavior in the domestic chicken. Animal Cognition 20(2), 127–147.

Domestic chickens are members of an order, Aves, which has been the focus of a revolution in our understanding of neuroanatomical, cognitive, and social complexity. At least some birds are now known to be on...

Marino, L., Allen, K. 2017. The psychology of cows. Animal Behavior and Cognition 4(4), 474–498

Domestic cows (Bos taurus) are consumed worldwide as beef and veal, kept as dairy product producers, employed as draft animals in labor, and are used for a long list of other products, including leather and...

Schlüns, H., Welling, H., Federici, J. R. et al. 2017. The glass is not yet half empty: Agitation but not Varroa treatment causes cognitive bias in honey bees. Animal Cognition 20(2), 233–241.

Honey bees (Apis mellifera) are prone to judge an ambiguous stimulus negatively if they had been agitated through shaking which simulates a predator attack. Such a cognitive bias has been suggested to reflect an internal...

Vinco, L. J., Archetti, I. L., Giacomelli, S. et al. 2016. Influence of crate height on the welfare of broilers during transport. Journal of Veterinary Behavior 14, 28-33.

Poultry transport systems are currently under investigation with a particular focus on design and dimensions of commercially available transport crates. The height of the crates currently used is debated and considered by some parties to...

Edgar, J., Held, S., Paul, E. et al. 2015. Social buffering in a bird. Animal Behaviour 105, 11-19.

The presence of a conspecific can ameliorate an individual's stress response. This social buffering is known to be widespread in social mammals but the capacity of birds to act as social buffers has not yet...

Pizzi, R., Dowling, A., Brown, D. et al. 2015. Facial thermography is not useful in assessing body temperature in common squirrel monkeys (Saimiri sciureus) in comparison to rectal temperatures. Journal of Zoo and Aquarium Research 3(3), 94-98.

A group of 39 captive common squirrel monkeys (Saimiri sciureus) had their body temperature measurements compared by rectal thermometry and facial infrared thermal imaging (Flir i3, Flir Systems Inc). Squirrel monkeys were caught up and...

Nääs, I. A., Garcia, R. G., Caldara, F. R. 2015. Infrared thermal image for assessing animal health and welfare. Journal of Animal Behaviour and Biometeorology 2(3), 66-72.

Infrared thermal imaging is a non-destructive testing technology that can be used to determine the superficial temperature of objects. This technology has an increasing use in detecting diseases and distress in animal husbandry within the...