Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Jessica, C.-G., Buendía-González, L., Ruiz-Gómez, M. L. et al. 2024. A minimally invasive procedure for blood extraction from Xenopus laevis allows follow up studies without euthanasia. Journal of Applied Animal Welfare Science 27(1), 192–199.

Blood extraction is extremely important for the development of scientific research; however, the existing methods for amphibian´s blood sampling are invasive, mainly leading to the euthanasia of the animal. Therefore, less intrusive methods that allow...

Kaleel, K. L., Secoura, P. L., Muñoz-Pérez, J. P. et al. 2024. Endoscopy and rectal enema for fecal collection in wild sea turtles (Chelonia mydas, Eretmochelys imbricata) in a field setting. Zoo Biology 43(1), 55–60.

Forty-seven free-ranging sea turtles (46- Chelonia mydas, 1- Eretmochelys imbricata) were examined via novel use of an endoscopy combined with a rectal enema to obtain large fecal sample volumes. The cloaca was insufflated using an...

Eeza, M. N. H., Singer, R., Ding, Y. et al. 2023. Probing microstructural changes in muscles of leptin-deficient zebrafish by non-invasive ex-vivo magnetic resonance microimaging. PLOS ONE 18(4), e0284215.

Leptin is a hormone that plays a key role in controlling food intake and energy homeostasis. Skeletal muscle is an important target for leptin and recent studies have shown that leptin deficiency may lead to...

Jorge, S., Félix, L., Costas, B. et al. 2023. Housing conditions affect adult zebrafish (Danio rerio) behavior but not their physiological status. Animals 13(6), 1120.

Zebrafish is a valuable model for neuroscience research, but the housing conditions to which it is exposed daily may be impairing its welfare status. The use of environmental enrichment and the refinement of methodology for...

Kumar, P., Abubakar, A. A., Ahmed, M. A. et al. 2023. Electroencephalogram and physiological responses as affected by slaughter empathy in goats. Animals 13(6), 1100.

Recent advances in emotions and cognitive science make it imperative to assess the emotional stress in goats at the time of slaughter. The present study was envisaged to study the electroencephalogram and physiological responses as...

Buenhombre, J., Daza-Cardona, E. A., Sousa, P. et al. 2023. Structural environmental enrichment and the way it is offered influence cognitive judgement bias and anxiety-like behaviours in zebrafish. Animal Cognition 26, 563–577.

Environmental enrichment in zebrafish generally reduces anxiety-related behaviours, improves learning in maze trials and increases health and biological fitness. However, certain types of enrichment or certain conditions induce the opposite effects. Therefore, it is essential...

Alejandro, J., Yamanashi, Y., Nemoto, K. et al. 2023. Reducing stress and stereotypic behaviors in captive female pygmy slow lorises (Nycticebus pygmeaus). American Journal of Primatology 85(7), e23495.

Improving captive conditions of pygmy slow lorises (Nekaris and Nijman have recently suggested that the pygmy slow loris should be called the pygmy loris and is distinctive enough to warrant a new genus, Xanthonycticebu) (Nycticebus...

Alef, R., Blaser, R. E. 2023. Social group during housing and testing modulates the effect of ethanol on zebrafish (Danio rerio) behavior. Behavioural Processes 209, 104877.

Zebrafish (Danio rerio) are a popular model organism in behavioral pharmacology research due to many genetic and neurological similarities with humans. As a social species, the presence (or absence) of conspecifics during housing and testing...

Fontana, B. D., Alnassar, N., Parker, M. O. 2023. Transgenerational effects of early-life stress on anxiety behavior in zebrafish (Danio rerio). Behavioural Processes 208, 104874.

Early-life adversity impacts on anxiety-related behaviors in adulthood. The effects of such adversity not only affect the animal itself, but can be passed on transgenerationally. Pervasive effects of experimentally-induced early-life stress (ELS) have been documented...

Kastelic, M., Gregurić Gračner, G., Tomažič, I. et al. 2023. Comparison of cortisol concentrations in different matrices in Alpine ibex (Capra ibex) at the zoo. Animals 13(15), 2491.

The usefulness of blood collection using venipuncture versus kissing bugs or medicinal leeches and the collection of saliva, faeces, hair, urine, and tears for measuring “immunoreactive” C (iC) concentration in Alpine ibexes was verified using...

Szabo, B., Ringler, E. 2023. Fear of the new? Geckos hesitate to attack novel prey, feed near objects and enter a novel space. Animal Cognition 26(2), 537–549.

Neophobia, the fear of novelty, is an ecologically important response which enables animals to avoid potentially harmful situations. Neophobia is a cognitive process by which individuals distinguish novelty from familiarity. In this study, we aimed...

Beeby, N., Baden, A. L., Higham, J. P. 2023. Urinary C-peptide and total triiodothyronine as energetic biomarkers for studies of lemurs. American Journal of Primatology 85(12), e23563.

Measuring energy balance and energy metabolism can provide crucial information for understanding the ecological and behavioral drivers of an animal’s energetic and physiological condition. Both urinary C-peptide (uCP) of insulin and urinary total triiodothyronine (uTT3)...

Martin-Flores, M., Nugen, S. A., Boesch, J. M. et al. 2023. Low-dose epidural anesthesia decreases the use of intraoperative systemic analgesics in goats undergoing lower urinary tract surgery. Journal of the American Veterinary Medical Association 261(8), 1147–1151.

OBJECTIVE To test whether the use of low-dose epidural anesthesia (EA) in goats undergoing lower urinary tract surgery reduces the requirements of perioperative analgesics, contributes to intraoperative hypotension, and improves postoperative comfort during the first...

Lambert, H., Elwin, A., D’Cruze, N. 2022. Frog in the well: A review of the scientific literature for evidence of amphibian sentience. Applied Animal Behaviour Science 247, 105559.

Millions of amphibians are traded annually around the world for the exotic pet industry. Their experience during both trade, and in captivity as pets, leads to numerous animal welfare issues. The poor welfare of many...

Nicolis, I. N., Beale, C. N., Bidot, W. A. et al. 2022. Performance and consistency of circulating warm water blankets for rodents. JAALAS 61(1), 96-100.

General anesthesia as used for rodent research can have adverse effects on physiologic mechanisms. Thermoregulation is often greatly inhibited, with resultant deleterious effects on cardiac and respiratory function. These potential effects can be mitigated by...

Midttun, H., Øverli, Ø., Tudorache, C. et al. 2022. Non-invasive sampling of water-borne hormones demonstrates individual consistency of the cortisol response to stress in laboratory zebrafish (Danio rerio). Scientific Reports 12(1) 6278.

Glucocorticoid (GC) stress hormones are well-known for their impact on phenotypic traits ranging from immune function to behaviour and cognition. For that reason, consistent aspects of an individual’s physiological stress response (i.e. GC responsiveness) can...

Schilling, A.-K., Mazzamuto, M. V., Romeo, C. 2022. A review of non-invasive sampling in wildlife disease and health research: What’s new? Animals 12(13), 1719.

In the last decades, wildlife diseases and the health status of animal populations have gained increasing attention from the scientific community as part of a One Health framework. Furthermore, the need for non-invasive sampling methods...

Knaebe, B., Weiss, C. C., Zimmermann, J. et al. 2022. The promise of behavioral tracking systems for advancing primate animal welfare. Animals 12(13), 1648.

Recent years have witnessed major advances in the ability of computerized systems to track the positions of animals as they move through large and unconstrained environments. These systems have so far been a great boon...

Böswald, L. F., Matzek, D., Mohr, H. et al. 2022. Morphometrics of Xenopus laevis kept as laboratory animals. Animals 12(21), 2986.

Morphometric data that provide information on body conditions can be used to monitor the health and well-being of animals. In laboratory animals, they can help to evaluate the stress due to experiments or treatments, following...

Mason, G. J., Lavery, J. M. 2022. What is it like to be a bass? Red herrings, fish pain and the study of animal sentience. Frontiers in Veterinary Science 9, 788289.

Debates around fishes’ ability to feel pain concern sentience: do reactions to tissue damage indicate evaluative consciousness (conscious affect), or mere nociception? Thanks to Braithwaite’s research leadership, and concerns that current practices could compromise welfare...

Gilmour, K. M., Bard, B. 2022. Social buffering of the stress response: Insights from fishes. Biology Letters 18(10), 20220332.

Social buffering of stress refers to the effect of a social partner in reducing the cortisol or corticosterone response to a stressor. It has been well studied in mammals, particularly those that form pair bonds...

Sørensen, D., Cloutier, S., Gaskill, B. (Eds.). 2021. Animal-centric Care and Management - Enhancing Refinement in Biomedical Research. CRC Press, Boca Raton, FL.

The concept of the 3Rs (Refinement, Reduction and Replacement) has been used as a framework for improving the welfare of laboratory animals for the last half century. By establishing an animal-centric view on housing and...

Burbano Lombana, D. A., Macrì, S., Porfiri, M. 2021. Collective emotional contagion in zebrafish. Frontiers in Behavioral Neuroscience 15, 730372.

Seeking to match our emotional state with one of those around us is known as emotional contagion-a fundamental biological process that underlies social behavior across several species and taxa. While emotional contagion has been traditionally...

Campbell, D. L. M., Lee, C. 2021. A perspective on strategic enrichment for brain development: Is this the key to animal happiness? Frontiers in Veterinary Science 8, 720422.

Livestock animals are sentient beings with cognitive and emotional capacities and their brain development, similar to humans and other animal species, is affected by their surrounding environmental conditions. Current intensive production systems, through the restrictions...

Baciadonna, L., Briefer, E. F., McElligott, A. G. 2020. Investigation of reward quality-related behaviour as a tool to assess emotions. Applied Animal Behaviour Science 225, 104968.

Animals are likely to appraise events as positive or negative based on their subjective perception, current state and past experiences. We tested the effects of anticipating positive (food anticipation), negative (inaccessible food) and neutral (clicker...