Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Martín, J., Barja, I., Rodríguez-Ruiz, G. et al. 2023. Hidden but potentially stressed: A non-invasive technique to quantify fecal glucocorticoid levels in a fossorial amphisbaenian reptile. Animals 13(1), 109.

To understand wildlife responses to the changing environment, it is useful to examine their physiological responses and particularly their endocrine status. Here, we validated an enzyme immunoassay (EIA) to non-invasively quantify fecal corticosterone metabolites (FCM)...

Morgado, J. N., Lamonaca, E., Santeramo, F. G. et al. 2023. Effects of management strategies on animal welfare and productivity under heat stress: A synthesis. Frontiers in Veterinary Science 10, 1145610.

Climate change includes different dramatic events, and among them, heat stress exposition is the strongest phenomenon affecting the livestock sector. The effects of heat stress events on animal welfare are complex and the economic impacts...

Robles, I., Luna, S. P. L., Trindade, P. H. E. et al. 2023. Validation of the Unesp-Botucatu pig composite acute pain scale (UPAPS) in piglets undergoing castration. PLOS ONE 18(4), e0284218.

To accurately assess pain and support broadly-based analgesic protocols to mitigate swine pain, it is imperative to develop and validate a species-specific pain scale. The objective of this study was to investigate the clinical validity...

Zieliński, D. 2023. The effect of enrichment on leopard geckos (Eublepharis macularius) housed in two different maintenace systems (rack system vs. Terrarium). Animals 13(6), 1111.

The aim of this study was to test the usefulness of environmental enrichment for Eublepharis macularius depending on the maintenance method (terrarium vs. rack system). The hypothesis was that reptiles kept in an extremely low-stimulus...

Höne, U., Krause, E. T., Bussemas, R. et al. 2023. Usage of outdoor runs and defaecation behaviour of fattening pigs. Applied Animal Behaviour Science 258, 105821.

Access to an outdoor run improves the housing conditions of fattening pigs by an enlarged space allowance, access to different climatic conditions and environmental stimulation. One central conflicting issue regarding outdoor runs is the emission...

O’Brien, S. L., Cronin, K. A. 2023. Doing better for understudied species: Evaluation and improvement of a species-general animal welfare assessment tool for zoos. Applied Animal Behaviour Science 264, 105965.

Accredited zoos and aquariums are required to have a welfare assessment process in place for the animals in their care. However, welfare assessment theoretical frameworks and methodologies vary widely. Previous studies have shown that taxonomic...

Bradley, H. S., Craig, M. D., Tomlinson, S. et al. 2023. Ecological considerations when designing mitigation translocations: An Australian reptile case study. Animals 13(16), 2594.

Translocation science has made considerable progress over the last two decades; however, reptile translocations still frequently fail around the world. Major knowledge gaps surround the basic ecology of reptile species, including basic factors such as...

Campbell-Ward, M. 2023. Quality-of-life assessments in zoo animals: Not just for the aged and charismatic. Animals 13(21), 3394

Zoos should aim to provide all of their animals with a good quality of life (QoL) throughout all life stages. In parallel with the evolution of QoL assessment questionnaires and tools in human and domestic...

Du Plooy, K. J., Swan, G. E., Myburgh, J. G. et al. 2023. Electroencephalogram (EEG) assessment of brain activity before and after electrical stunning in the Nile crocodile (Crocodylus niloticus). Scientific Reports 13(1), 20250.

Electrical stunning is used to capture crocodiles to perform routine management procedures. It is essential from a welfare point that electrical stunning must cause unconsciousness in animals. However, there is no information of whether or...

Ede, T., Parsons, T. D. 2023. Cognitive tasks as measures of pig welfare: A systematic review. Frontiers in Veterinary Science 10.

Cognitive approaches are increasingly used to assess animal welfare, but no systematic review has been conducted on pigs despite their cognitive capacities. Our aims were two-fold: first, to assess the popularity and heterogeneity of this...

Goma, A. A., Uddin, J., Kieson, E. 2023. Lateralised behavioural responses in livestock to environmental stressors: Implications for using infrared thermography to assess welfare conditions. Animals 13(23), 3663.

Lateralised behavioural responses to environmental stressors have become more frequently used as indicators of social welfare in animals. These lateralised behavioural responses are under the control of asymmetrical brain functions as part of the primary...

Augustine, L., Baskir, E., Kozlowski, C. P. 2022. Investigating welfare metrics for snakes at the Saint Louis zoo. Animals 12(3), 373.

Modern herpetoculture has seen a rise in welfare-related habitat modifications, although ethologically-informed enclosure design and evidence-based husbandry are lacking. The diversity that exists within snakes complicates standardizing snake welfare assessment tools and evaluation techniques. Utilizing...

Leeds, A., Riley, A., Terry, M. et al. 2022. Out of sight, out of mind or just something in the way? Visual barriers do not reduce intraspecific agonism in an all-male group of Nile crocodiles (Crocodylus niloticus). Animals 12(3), 269.

Here, we evaluated if visual barriers could reduce intraspecific agonism in an all-male group of Nile crocodiles (Crocodylus niloticus) living in a zoo. Crocodiles were monitored for nearly 100 h, and four “hotspots” of aggression...

Rowe, E., Mullan, S. 2022. Advancing a “good life” for farm animals: Development of resource tier frameworks for on-farm assessment of positive welfare for beef cattle, broiler chicken and pigs. Animals 12(5), 565.

There is increasing recognition that farm animal welfare standards should ensure positive welfare, as well as prevent negative welfare. Resources that are valued by an animal and that provide opportunities to engage in motivated behaviours...

Cargill, B. M., Benato, L., Rooney, N. J. 2022. A survey exploring the impact of housing and husbandry on pet snake welfare. Animal Welfare 31(2), 193-208.

Snake ownership is popular; however, housing and care may not always satisfy the animal's welfare needs. For example, snakes are often kept in environmental conditions that restrict their ability to stretch out fully or move...

Diggins, R., Burrie, R., Ariel, E. et al. 2022. A review of welfare indicators for sea turtles undergoing rehabilitation, with emphasis on environmental enrichment. Animal Welfare 31(2), 219-230.

For animals undergoing rehabilitation it is vital to monitor welfare in a way that is feasible, practical, and limits stress to the animal. The industry gold standard is to assess welfare under the Five Domains...

Zhang, J., Yu, L., Yin, G. 2022. Evaluation of behavior and affective state of different-parity sows with strong/weak pupil light reflex. Animals 12(9), 1184.

The stall-housing system is commonly used in the modern swine industry in many countries; however, long-term space restrictions can cause affective and physiological abnormalities in sows. The pupil light reflex (PLR) can reflect the psychological...

Kinane, O., Butler, F., O’Driscoll, K. 2022. Freedom to move: Free lactation pens improve sow welfare. Animals 12(14), 1762.

Farrowing crates present a major animal welfare problem. This study investigated the effects of temporary confinement at farrowing on sow welfare and aimed to determine whether this type of system could improve sow welfare through...

Lou, M. E., Porter, S. T., Massey, J. S. et al. 2022. The application of 3D landmark-based geometric morphometrics towards refinement of the piglet grimace scale. Animals 12(15), 1944.

Proper methods of assessment to objectively identify pain are essential for welfare improvements of piglets undergoing surgical castration on commercial farms. The Piglet Grimace Scale (PGS) is used to identify changes in facial expressions caused...

Conrad, L., Aubé, L., Heuchan, E. et al. 2022. Effects of farrowing hut design on maternal and thermoregulatory behaviour in outdoor housed sows and piglets. Applied Animal Behaviour Science 251, 105616.

This study aimed to determine the effect of three different farrowing huts on the behaviour of outdoor housed sows and piglets during summer in Eastern Canada, with a focus on thermoregulatory and crushing behaviours. Forty-two...

Drexl, V., Dittrich, I., Haase, A. et al. 2022. Tail posture as an early indicator of tail biting - A comparison of animal and pen level in weaner pigs. Applied Animal Behaviour Science 252, 105654.

The occurrence of tail biting is one of the most important animal welfare problems in pig farming and needs to be recognised early to reduce injuries and suffering. The posture of the tail could be...

Stäbler, R., Patzkéwitsch, D., Reese, S. et al. 2022. Behavior of domestic pigs under near-natural forest conditions with ad libitum supplementary feeding. Journal of Veterinary Behavior 48, 20-35.

Today's livestock agriculture faces major changes in domestic pig husbandry—besides animal health and productivity, aspects of animal welfare and animal-friendly husbandry systems for pigs increasingly gain attention. To get a basic and current overview of...

Guevara, R. D., Pastor, J. J., Manteca, X. et al. 2022. Systematic review of animal-based indicators to measure thermal, social, and immune-related stress in pigs. PLOS ONE 17(5), e0266524.

The intense nature of pig production has increased the animals’ exposure to stressful conditions, which may be detrimental to their welfare and productivity. Some of the most common sources of stress in pigs are extreme...

Parois, S. P., Van Der Zande, L. E., Knol, E. F. et al. 2022. A multi-suckling system combined with an enriched housing environment during the growing period promotes resilience to various challenges in pigs. Scientific Reports 12(1), 6804.

Little is known about the impact of social and environmental enrichment on improving livestock resilience, i.e. the ability to quickly recover from perturbations. We evaluated the effect of an alternative housing system (AHS) on resilience...

Archer, C., Garcia, A., Henderson, M. et al. 2022. Olfactory enrichment using a maternal pheromone improved post-weaning pig performance and behavior. Frontiers in Veterinary Science 9, 965370.

The post-weaning environment in commercial pig nursery buildings is typically devoid of both the sow and her semiochemicals. Among other factors, the loss of maternal odors may contribute to post-weaning stress. In this work, we...