Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Sloman, K, A., Bouyoucos, I. A., Brooks, E. J. et al. 2019. Ethical considerations in fish research. Journal of Fish Biology 94(4), 556-577.

In this review, we focus primarily on the refinement of common methods used in fish research based on emerging knowledge with the aim of improving the welfare of fish used in scientific studies. We consider...

Carbonara, P., Dioguardi, M., Cammarata, M. et al. 2019. Basic knowledge of social hierarchies and physiological profile of reared sea bass Dicentrarchus labrax (L.). PLOS ONE 14(1), e0208688.

The effects of social hierarchies (dominant/subordinate individuals), such as aggressiveness, feeding order, and territoriality, are some of the characteristics used for describing fish behaviour. Social hierarchy patterns are still poorly understood in European-reared sea bass...

Jacobsen, J. V., Steen, K., Nilssen, K. J. 2019. Anaesthetic efficacy of Aqui-S, Benzoak, and MS-222 on lumpfish (Cyclopterus lumpus) fries. Impact from temperature, salinity, and fasting. PLOS ONE 14(1), e0211080.

Large numbers of lumpfish are produced for the Norwegian salmon industry and are used to combat sea lice infestations. Periodically high mortality of farmed lumpfish demonstrates the need to improve farming conditions and animal welfare...

Nie, C., Ban, L., Ning, Z. et al. 2019. Feather colour affects the aggressive behaviour of chickens with the same genotype on the dominant white (I) locus. PLOS ONE 14(5), e0215921.

Aggression in chickens is a serious economic and animal welfare issue in poultry farming. Pigmentation traits have been documented to be associated with animal behaviour. Chicken pecking behaviour has been found to be related to...

Glover, C. N., Newton, D., Bajwa, J. et al. 2019. Behavioural responses of the hagfish Eptatretus stoutii to nutrient and noxious stimuli. Scientific Reports 9, 13369.

The suitability of a traditional testing paradigm (e.g. choice chamber) for assessing chemosensory behaviour in the Pacific hagfish, Eptatretus stoutii, was examined. Actively-swimming hagfish, tested at night, showed no preference for any region of a...

Jung, L., Knierim, U. 2019. Differences between feather pecking and non-feather pecking laying hen flocks regarding their compliance with recommendations for the prevention of feather pecking – A matched concurrent case-control design. Applied Animal Behaviour Science 219, 104839.

Feather pecking (FP) is a multifactorial problem in all housing systems. Using a case-control design we wanted to determine a set of variables which may be decisive for a flock to become case or control...

Balko, J. A., Lindemann, D. M., Allender, M. C. et al. 2019. Evaluation of the anesthetic and cardiorespiratory effects of intramuscular alfaxalone administration and isoflurane in budgerigars (Melopsittacus undulatus) and comparison with manual restraint. Journal of the American Veterinary Medical Association 254(12), 1427-1435.

OBJECTIVE To evaluate the anesthetic and cardiorespiratory effects of IM alfaxalone and isoflurane administration in budgerigars (Melopsittacus undulatus) and compare use of these agents with use of manual restraint. ANIMALS 42 healthy budgerigars. PROCEDURES For...

Miller, K. A., Hill, N. J., Carrasco, S. E. et al. 2019. Pharmacokinetics and safety of intramuscular meloxicam in zebra finches (Taeniopygia guttata). JAALAS 58(5), 589–593.

Meloxicam is the most frequently used NSAID in birds; however, its elimination t1/2 is highly variable among species. Because zebra finches that require analgesia could benefit from receiving meloxicam, we performed a pharmacokinetic study involving...

Sanchez-Casanova, R., Sarmiento-Franco, L., Segura-Correa, J. et al. 2019. Effects of outdoor access and indoor stocking density on behaviour and stress in broilers in the subhumid tropics. Animals 9(12), 1016.

Studies investigating the welfare of commercial-line broiler chickens raised in houses with outdoor access in the tropics are scarce, and none have investigated whether responses vary according to indoor conditions. Hence, we assessed the effects...

Riddle, E. R., Ali, A. B. A., Campbell, D. L. M. et al. 2018. Space use by 4 strains of laying hens to perch, wing flap, dust bathe, stand and lie down. PLOS ONE 13(1), e0190532.

The laying hen industry is implementing aviary systems intended to improve welfare by providing hens with more space and resources to perform species-specific behaviors. To date, limited research has examined spatial requirements of various strains...

Santurtun, E., Broom, D. M., Phillips, C. J. C. 2018. A review of factors affecting the welfare of Atlantic salmon (Salmo salar). Animal Welfare 27(3), 193-204.

In the expanding salmon industry, many farmers use production methods that could result in poor welfare of the fish at various points of their lifecycle. We have reviewed methods used for producing salmon for food...

Chatigny, F., Creighton, C. M., Stevens, E. D. 2018. Updated review of fish analgesia. JAALAS 57(1), 5-12.

Analgesics are an integral part of routine pain management in mammals, yet their use in fish is still limited. Some recommendations on the use of analgesics in fish are currently in the literature; however, information...

dos Santos Gauy, A. C., Pereira Boscolo, C. N., Gonçalves-de-Freitas, E. 2018. Less water renewal reduces effects on social aggression of the cichlid Pterophyllum scalare. Applied Animal Behaviour Science. 198, 121-126.

Changes in aquatic environments can affect fish behavior. Water renewal, for example, can dilute chemical signals, which are a social communication tool used by some fish species, and this dilution increases aggressive interactions in the...

Langley, E. J. G., van Horik, J. O., Whiteside, M. A. et al. 2018. Individuals in larger groups are more successful on spatial discrimination tasks. Animal Behaviour 142, 87-93.

To understand how natural selection may act on cognitive processes, it is necessary to reliably determine interindividual variation in cognitive abilities. However, an individual's performance in a cognitive test may be influenced by the social...

Chance, R. J., Cameron, G. A., Fordyce, M. et al. 2018. Effects of repeated anaesthesia on gill and general health of Atlantic salmon, Salmo salar. Journal of Fish Biology 93(6), 1069-1081.

Fish are the second most widely utilized vertebrate group used for scientific procedures in the United Kingdom, but the development and application of 3Rs (the principles of replacement, reduction, and refinement) in aquaculture disease research...

Zepp, M., Louton, H., Erhard, M. et al. 2018. The influence of stocking density and enrichment on the occurrence of feather pecking and aggressive pecking behavior in laying hen chicks. Journal of Veterinary Behavior 24, 9-18.

The housing conditions and environments experienced during the rearing period can influence the development of feather pecking in chickens during this time and in the subsequent laying period. The aim of this study was to...

Chatigny, F., Kamunde, C., Creighton, C. M. et al. 2017. Uses and doses of local anesthetics in fish, amphibians, and reptiles. JAALAS 56(3), 244-253.

Local anesthetics are an integral part of routine pain management in mammals, yet their use is relatively limited in fish, amphibians and reptiles. These animals frequently undergo potentially painful surgical procedures and therefore could possibly...

Phillips, B. E., Posner, L. P., Lewbart, G. A. et al. 2017. Effects of alfaxalone administered intravenously to healthy yearling loggerhead sea turtles (Caretta caretta) at three different doses. Journal of the American Veterinary Medical Association 250(8), 909-917.

OBJECTIVE To compare physiologic and anesthetic effects of alfaxalone administered IV to yearling loggerhead sea turtles (Caretta caretta) at 3 different doses. DESIGN Randomized crossover study. ANIMALS 9 healthy yearling loggerhead sea turtles. PROCEDURES Animals...

Ludwig, S. C., Kapetanopoulos, K., Kotrschal, K. et al. 2017. Effects of mate separation in female and social isolation in male free-living Greylag geese on behavioural and physiological measures. Behavioural Processes 138, 134-141.

The presence of a social partner may significantly contribute to coping with stressful events, whereas dyadic separation generally increases glucocorticoid levels and, thereby, might also affect immune function and health. To study the covariation between...

Silva de Souza Matos, L., Palme, R., Silva Vasconcellos, A. 2017. Behavioural and hormonal effects of member replacement in captive groups of blue-fronted amazon parrots (Amazona aestiva). Behavioural Processes 138, 160-169.

Social species in captivity may face allostatic overload due to artificial grouping and other social constraints. In rescue centres, groups of psittacines are constantly mixed due to the arrival and/or release of individuals; this procedure...

Lalot, M., Ung, D., Péron, F. et al. 2017. You know what? I’m happy. Cognitive bias is not related to personality but is induced by pair-housing in canaries (Serinus canaria). Behavioural Processes 134, 70-77.

Recent studies suggest that cognitive bias could constitute a novel and valid measure of animal welfare. Although interest for a link between personality and cognition is growing, no study to date investigated whether a cognitive...

Vargas-Galicia, A. J., Sosa-Montes, E. Rodríguez-Ortega, L. T. et al. 2017. Effect of litter material and stocking density on bone and tendon strength, and productive performance in broilers. Canadian Journal of Animal Science 97(4), 673-682.

Litter material and stocking density were evaluated on welfare-related variables and productive performance in broilers. Male chicks (n = 744, “Ross 308” strain) were raised on either tezontle (TEZ) or wood shavings (WS) litter, with...

Williams, I., Hoppitt, W., Grant, R. 2017. The effect of auditory enrichment, rearing method and social environment on the behavior of zoo-housed psittacines (Aves: Psittaciformes); implications for welfare. Applied Animal Behaviour Science 186, 85-92.

The psychological and physiological effects of different genres of music are well documented in humans. These concepts have also been studied in kenneled dogs and some exotic animals, implying that animals may experience benefits similar...

Keeling, L. J., Newberry, R. C., Estevez, I. 2017. Flock size during rearing affects pullet behavioural synchrony and spatial clustering. Applied Animal Behaviour Science 194, 36-41.

Animals are often synchronised in their behaviour, with costs and benefits varying according to group size and the behaviour being performed. Making decisions about optimal allocation and distribution of resources to animals in our care...

Yin, L., Yang, H., Xu, L. et al. 2017. Feather performance, walking ability, and behavioral changes of geese in response to different stocking densities. Applied Animal Behaviour Science 196, 108-112.

In recent decades, goose production has become more specialized and widespread, and rearing geese in plastic wire-floor pens is common in China. This type of rearing pattern is more productive than other rearing patterns since...