Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Jolles, J. W., Aaron-Taylor, B., Manica, A. 2016. Recent social conditions affect boldness repeatability in individual sticklebacks. Animal Behaviour 112, 139-145.

Animal personalities are ubiquitous across the animal kingdom and have been shown both to influence individual behaviour in the social context and to be affected by it. However, little attention has been paid to possible...

Brown, J. L., Paris, S., Prado-Oviedo, N. A. 2016. Reproductive health assessment of female elephants in North American zoos and association of husbandry practices with reproductive dysfunction in African Elephants (Loxodonta africana). PLOS ONE 11(7), e0145673.

As part of a multi-institutional study of zoo elephant welfare, we evaluated female elephants managed by zoos accredited by the Association of Zoos and Aquariums and applied epidemiological methods to determine what factors in the...

Holdgate, M. R., Meehan, C. L., Hogan, J. N. et al. 2016. Walking behavior of zoo elephants: Associations between GPS-measured daily walking distances and environmental factors, social factors, and welfare indicators. PLOS ONE 11(7), e0150331.

Research with humans and other animals suggests that walking benefits physical health. Perhaps because these links have been demonstrated in other species, it has been suggested that walking is important to elephant welfare, and that...

Meehan, C. L., Hogan, J. N., Bonaparte-Saller, M. K. et al. 2016. Housing and social environments of African (Loxodonta africana) and Asian (Elephas maximus) elephants in North American zoos. PLOS ONE 11(7), e0146703.

We evaluated 255 African (Loxodonta africana) and Asian (Elephas maximus) elephants living in 68 North American zoos over one year to quantify housing and social variables. All parameters were quantified for the both the day...

Holdgate, M. R., Meehan, C. L., Hogan, J. N. et al. 2016. Recumbence behavior in zoo elephants: Determination of patterns and frequency of recumbent rest and associated environmental and social factors. PLOS ONE 11(7), e0153301.

Resting behaviors are an essential component of animal welfare but have received little attention in zoological research. African savanna elephant (Loxodonta africana) and Asian elephant (Elephas maximus) rest includes recumbent postures, but no large-scale investigation...

McMillan, F. D. 2016. The psychobiology of social pain: Evidence for a neurocognitive overlap with physical pain and welfare implications for social animals with special attention to the domestic dog (Canis familiaris). Physiology & Behavior 167, 154-171.

Social pain is the negative affect signaling threat or harm to social relationships. Loneliness is perceived social isolation and can be found across phylogeny. Evidence from diverse fields demonstrates an overlap of social and physical...

Hellström, G., Heynen, M., Borcherding, J. et al. 2016. Individual consistency and context dependence in group-size preference of Eurasian perch. Behavioural Processes 133, 6-11.

Many fish spend a large part of their life in groups. The size of the group influences potential costs and benefits of group living, and depending on context a fish may prefer different group sizes...

Hopper, L. D. 2016. Automated microsampling technologies and enhancements in the 3Rs. ILAR Journal 57(2), 166-177.

Data collected in vivo is essential for advising decisions on drug screening and development and basic research, and animal models are used extensively for acquiring experimental measurements. Traditionally, collection of specimens has been invasive, stressful...

Brandão, M. L., Braithwaite, V. A., Gonçalves-de-Freitas, E. 2015. Isolation impairs cognition in a social fish. Applied Animal Behaviour Science 171, 204-210.

In variable environments, animals can learn to alter their behavior to adjust to changes. Sometimes, however, this learning ability can be impaired. For example, challenges in the social or physical environment can trigger physiological responses...

Bayne, K. A., Beaver, B. V., Mench, J. A. et al. 2015. Laboratory animal behavior. In: Laboratory Animal Medicine, 3rd edition. Fox, J. G., Anderson, L., Otto, G., et al. (eds). Elsevier, Inc., Amsterdam, NL. pp. 1617-1651.

The study of laboratory animal behavior has increased steadily over the last decade, with expanding emphasis on a variety of commonly used species. In the United States, this trend was initially focused on species for...

Modarressie, R., Gunther, C., Bakker, T. 2015. UV deprivation influences social UV preference in juvenile sticklebacks. Animal Behavior and Cognition 2(2), 186–199.

Social aggregations occur in many different animal taxa and mainly result from non-random assortment. Investigating factors that shape and maintain the composition of social aggregations are among others a main topic for understanding ecological speciation...

Bode, A. E., Barber, H. 2014. Use of vinyl nonadhesive tape as an alternative for positioning rodents in small animal imaging. American Association for Laboratory Animal Science [AALAS] Meeting Official Program, 597-598. (Abstract #P185).

Specific positioning for different imaging modalities is essential in our small animal imaging core. While we have different animal holders designed to position the animal inside the MRI, additional securing of the animal to the...

Hedrick, C., Rowley, M., Lewis, S. 2014. Repurposing and recycling an institutionally retired enrichment device. American Association for Laboratory Animal Science [AALAS] Meeting Official Program, 564 (Abstract #P56).

One aspect of maintaining and updating an environmental enrichment program is regular review of enrichment devices and their current uses. The review includes maintaining an accurate inventory to reflect the animal census, evaluating species-specific use...

Hesse, S., Thunken, T. 2014. Growth and social behavior in a cichlid fish are affected by social rearing environment and kinship. Naturwissenschaften 101, 273-283.

Living in groups is a widespread phenomenon in many animal taxa. The reduction of predation risk is thought to be an important cause for the formation of groups. Consequently, grouping behavior is particularly pronounced during...

Bayne, K. 2014. A historical perspective on social housing. Enrichment Record 18, 8-11.

The ever-broadening scope of social housing of research animals is increasingly encompassing the diversity of species used in research, including dogs, cats, rabbits, a variety of rodent species, agricultural animals, aquatic animals, and others.The Guide's...

Rushen, J., de Passillé, A. M., Appleby, M. C. et al. 2014. Alone or together: A risk assessment approach to group housing. In: Dilemmas in Animal Welfare. Appleby, M. C., Weary, D. M., Sandøe, P. (eds), 169-187. CAB International, Oxfordshire, UK.

The question of whether it is better to house animals in groups rather than alone deals with the unresolved issues at the heart of animal welfare. In particular, we need to be able to rank...

National Research Council. 2009. Recognition and Alleviation of Pain in Laboratory Animals. The National Academies Press: Washington, DC, 198 pp.

Recognition and Alleviation of Pain in Laboratory Animals, the second of two reports revising the 1992 publication Recognition and Alleviation of Pain and Distress in Laboratory Animals from the Institute for Laboratory Animal Research (ILAR)...

Branson, E. J. (Ed.) 2008. Fish Welfare. Blackwell Publishing Ltd: Oxford, UK, 300 p.

Fish have the same stress response and powers of nociception as mammals. Their behavioural responses to a variety of situations suggest a considerable ability for higher level neural processing – a level of consciousness equivalent...

Van Loo, P., Skoumbourdis, E., Reinhardt, V. 2006. Postsurgical pairing: A discussion by the Refinement & Enrichment Forum. Animal Technology and Welfare 5(1), 17-19.

Our experience-based discussion suggests that social animals benefit from compatible companionship during post-operative recovery. The traditional practice of keeping animals alone in an unfamiliar environment after surgery increases the subjects surgery-associated stress. Providing a familiar...

Obernier, J. A., Baldwin, R. L. 2006. Establishing an appropriate period of acclimatization following transportation of laboratory animals. ILAR Journal 47(4), 364-369.

Stress associated with transportation has widespread effects on physiological systems in laboratory animals, including changes in the cardiovascular, endocrine, immune, central nervous, and reproductive systems. Although short-lived, these changes can confound research if animals are...

Conour, L. A., Murray, K. A., Brown, M. J. 2006. Preparation of animals for research -- Issues to consider for rodents and rabbits. ILAR Journal 47(4), 283-293.

This article provides details to consider when preparing to use animals in biomedical research. The stress of transport and receipt of animals into a new environment mandate the need for a period of stabilization and...

Luzzi, M., Skoumbourdis, E., Baumans, V. et al. 2005. Collecting blood from rodents: A discussion by the Laboratory Animal Refinement and Enrichment Forum. Animal Technology and Welfare 4, 99-102.

The question was asked: "In your own experience, what is the least disturbing technique - from the subject's point of view! - of blood collection for rodents?" In summary, it is fair to conclude the...

Bayne, K. 2005. Potential for unintended consequences of environmental enrihment for laboratory animals and research results. ILAR Journal 46(2), 129-139.

Many aspects of the research animal's housing environment are controlled for quality and/or standardization. Of recent interest is the potential for environmental enrichment to have unexpected consequences such as unintended harm to the animal, or...

Sambrook, T. D., Buchanan-Smith, H. M. 1997. Control and complexity in novel object enrichment. Animal Welfare 6(3), 207-216.

We discuss the properties of controllability and complexity in novel object enrichment, their definition and present a critique of previous work related to them.