Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Jirkof, P., Rudeck, J., Lewejohann, L. 2019. Assessing affective state in laboratory rodents to promote animal welfare—What is the progress in applied refinement research? Animals 9(12), 1026.

In the past, there was a strong focus on avoiding or reducing negative animal welfare in animal experimentation. Recently, the importance of promoting positive animal welfare in laboratory animals has been highlighted. To ensure and...

Rowland, N. E., Toth, L. A. 2019. Analytic and interpretational pitfalls to measuring fecal corticosterone metabolites in laboratory rats and mice. Comparative Medicine 69(5), 337–349.

Minimization and alleviation of stress are generally viewed as desirable aspects of laboratory animal management and use. However, achieving that goal requires an unambiguous and valid measure of stress. Glucocorticoid concentrations are commonly used as...

McMillan, F. D. (ed). 2019. Mental Health and Well-being in Animals (2nd ed). CABI, Wallingford, UK.

This second edition is fully revised, expanded, and comprehensively updated with the most current knowledge about the full array of mental health issues seen in animals. Written by key opinion leaders, internationally-recognized experts and specialists...

Williams, E., Chadwick, C. L., Yon, L. et al. 2018. A review of current indicators of welfare in captive elephants (Loxodonta africana and Elephas maximus). Animal Welfare 27(3), 235-249.

Concerns over elephant welfare in UK zoos have implications for their future in captivity. To monitor improvements made to elephant welfare in UK zoos, non-invasive, valid and reliable indicators of welfare are needed. Using a...

Clegg, I. 2018. Cognitive bias in zoo animals: An optimistic outlook for welfare assessment. Animals 8(7), 104.

Cognitive bias testing measures how emotional states can affect cognitive processes, often described using the “glass half-full/half-empty” paradigm. Classical or operant conditioning is used to measure responses to ambiguous cues, and it has been reported...

Wolfensohn, S., Shotton, J., Bowley, H. et al. 2018. Assessment of welfare in zoo animals: Towards optimum quality of life. Animals 8(7), 110.

Zoos are required to maintain a high standard of animal welfare, and this can be assessed using a combination of resource-based and animal-based indices usually divided into behavioural indicators, physiological indicators and clinical/pathological signs. Modern...

Jones, S., Neville, V., Higgs, L. et al. 2018. Assessing animal affect: An automated and self-initiated judgement bias task based on natural investigative behaviour. Scientific Reports 8, 12400.

Scientific methods for assessing animal affect, especially affective valence (positivity or negativity), allow us to evaluate animal welfare and the effectiveness of 3Rs Refinements designed to improve wellbeing. Judgement bias tasks measure valence; however, task-training...

Jayson, S., Harding, L., Michaels, C. J. et al. 2018. Development of a body condition score for the mountain chicken frog (Leptodactylus fallax). Zoo Biology 37(3), 196–205.

The Critically Endangered mountain chicken frog (Leptodactylus fallax) has undergone drastic population decline due to habitat loss, hunting, invasive species, and chytridiomycosis. In response, several partner institutions initiated a conservation breeding program. It is important...

Hocking, A. J., Elliot, D., Hua, J. et al. 2018. Administering fixed oral doses of curcumin to rats through voluntary consumption. JAALAS 57(5), 508–512.

Curcumin, a polyphenol derived from turmeric, has a wide variety of therapeutic benefits including antiinflammatory, antioxidative, and chemopreventative effects. Oral gavage is widely performed to administer curcumin in laboratory rodents in several experimental models. Although...

Raya, J., Neves Girardi , C. E., Hipólide, D. C. 2019. Corticosterone assimilation by a voluntary oral administration in palatable food to rats. Journal of Applied Animal Welfare Science 22(1), 37-41.

Drug delivery in research on nonhuman animals in the laboratory is still challenging because it is usually invasive and stressful. Stress-free voluntary oral drug administration in water lacks precise control of dose and timing of...

Byrd, R., Boyd, S., Buckmaster, C. 2018. Rat thunder jacket— A zen experience. Laboratory Animal Science Professional 6(3) (September), 55-57.

Germ-free rats are fairly uncommon, relative to germ-free mice, and restraining these animals safely and effectively for compound administration and blood collection can be challenging. There are many commercially available varieties of restraint devices, but...

Norton, B. B., Tunseth, D., Holder, K. et al. 2018. Causes of morbidity in captive African lions (Panthera leo) in North America, 2001–2016. Zoo Biology 37(5), 354-359.

The lion (Panthera leo) is an iconic resident of zoos and wild animal parks throughout the world. Regular assessment of the morbidity of captive lions is necessary to address wellness concerns and improve the healthcare...

Morfeld, K. A., Brown, J.L. 2017. Metabolic health assessment of zoo elephants: Management factors predicting leptin levels and the glucose-to-insulin ratio and their associations with health parameters. PLOS ONE 12(11), e0188701.

Screening for metabolic-related health problems can enhance animal welfare, so the purpose of this study was to conduct the first metabolic health assessment of zoo elephants and use epidemiological methods to determine how factors in...

Chadwick, C. L., Williams, E., Asher, L. et al. 2017. Incorporating stakeholder perspectives into the assessment and provision of captive elephant welfare. Animal Welfare 26(4), 461-472.

Recent concerns over the welfare of elephants in UK zoos have implications for their future in captivity, and it is clear that improvements in welfare should be made. Evidence suggests that the knowledge of experienced...

Krebs, B. L., Torres, E., Chesney, C. et al. 2017. Applying behavioral conditioning to identify anticipatory behaviors. Journal of Applied Animal Welfare Science 20(2), 155-175.

The ability to predict regular events can be adaptive for nonhuman animals living in an otherwise unpredictable environment. Animals may exhibit behavioral changes preceding a predictable event; such changes reflect anticipatory behavior. Anticipatory behavior is...

Brenneis, C., Westhof, A., Holschbach, J. et al. 2017. Automated tracking of motion and body weight for objective monitoring of rats in colony housing. JAALAS 56(1), 18-31.

Living together in large social communities within an enriched environment stimulates self-motivated activity in rats. We developed a modular housing system in which a single unit can accommodate as many as 48 rats and contains...

Barker, T. H., Bobrovskaya, L., Howarth, G. S. et al. 2017. Female rats display fewer optimistic responses in a judgment bias test in the absence of a physiological stress response. Physiology & Behavior 173, 124-131.

Metabolic cages are a type of housing used in biomedical research. Metabolic cage housing has been demonstrated to elicit behavioural and physiological changes in rodents housed within them. The nature of this effect has been...

Simpson, D. 2017. Investigation of transportation on rat acclimatisation using novel cage side recording equipment (Rodent Big Brother). Animal Technology and Welfare 16(1), 1-12.

The transportation of animals from supplier to experimental facility is one of the biggest stressors to animals in research. Transportation unavoidably causes stress and when the animals arrive at the testing facility they require a...

Kleefeld, S., Bannerton, K., Kelly, J.2017. Effect of moderate environmental enrichment on commonly used behavioural tests in rats. Animal Technology and Welfare 16(1), 75-76.

The environment that laboratory animals are housed in should reflect their natural habitats in a manner that can satisfy their innate physiological and behavioural needs. This includes nest building, hiding, exploring and foraging. Providing environmental...

Hawkins, P., McNeilly, A., Watson, J. et al. 2017. Report of the 2016 RSPCA/UFAW Rodent and Rabbit Welfare Group meeting. Animal Technology and Welfare 16(2), 77-86.

The RSPCA/UFAW Rodent (and now Rabbit) Welfare Group held a one-day meeting on 1 November 2016 at the University of Edinburgh and was attended by 70 delegates. Presentation topics included refinements in blood sampling rodents...

Jones, S., Paul, E. S., Dayan, P. et al. 2017. Pavlovian influences on learning differ between rats and mice in a counterbalanced Go/NoGo judgement bias task. Behavioural Brain Research 331, 214-224.

Judgement bias tests of animal affect and hence welfare assume that the animal’s responses to ambiguous stimuli, which may herald positive or negative outcomes, are under instrumental control and reflect ‘optimism’ or ‘pessimism’ about what...

Meagher, R. K., Campbell, D. L. M., Mason, G. J. 2017. Boredom-like states in mink and their behavioural correlates: A replicate study. Applied Animal Behaviour Science 197, 112-119.

Scientists and laypeople have long expressed concern that animals in non-enriched, unchanging environments might experience boredom. However, this had attracted little empirical study: the state is difficult to assess without verbal self-reports, and spontaneous behavioural...

Schiffmann, C., Clauss, M., Hoby, S. et al. 2017. Visual body condition scoring in zoo animals – Composite, algorithm and overview approaches. Journal of Zoo and Aquarium Research 5(1), 1-10.

Various body condition scoring (BCS) methods have been developed as management tools in zoo animal husbandry. In contrast to BCS for farm animals, where visual and palpable features are used, these protocols are mainly restricted...

Makowska, I. J., Weary, D. M. 2016. Differences in anticipatory behaviour between rats (Rattus norvegicus) housed in standard versus semi-naturalistic laboratory environments. PLOS ONE 11(1), e0147595.

Laboratory rats are usually kept in relatively small cages, but research has shown that they prefer larger and more complex environments. The physiological, neurological and health effects of standard laboratory housing are well established, but...

Hales, C. A., Robinson, E. S. J., Houghton, C. J. 2016. Diffusion modelling reveals the decision making processes underlying negative judgement bias in rats. PLOS ONE 11(3), e0152592.

Human decision making is modified by emotional state. Rodents exhibit similar biases during interpretation of ambiguous cues that can be altered by affective state manipulations. In this study, the impact of negative affective state on...