Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Thomas, A. D., Orsel, K., Cortés, J. A. et al. 2021. Impact of digital dermatitis on feedlot cattle behaviour. Applied Animal Behaviour Science 244, 105468.

Digital dermatitis (DD) is an infectious disease affecting the bovine digital skin which can cause lameness and significantly affect animal welfare and economics. Digital dermatitis has emerged in feedlots and early identification of DD lesions...

Pfoh, R., Tiddi, B., Di Bitetti, M. S. et al. 2021. Grooming site preferences in black capuchin monkeys: Hygienic vs. social functions revisited. American Journal of Primatology 83(12), e23336.

When primates groom each other, they tend to concentrate on those parts of the body they cannot efficiently self-groom (i.e., not visually accessible), and prefer to intensify grooming in areas with high hair density, thus...

Anderson, J., Kaplan-Stein, S., Adolph, S. et al. 2020. Assessment of non-contact infrared thermometer measurement sites in birds. Journal of Applied Animal Welfare Science 23(2), 131-139.

The standard method of obtaining body temperature in a bird can be a stressful event, making routine evaluations challenging. Twenty-eight privately owned birds in good health were enrolled in the study to compare digital and...

Reese, L., Ladwig-Wiegard, M., von Fersen, L. et al. 2020. Deflighting zoo birds and its welfare considerations. Animal Welfare 29(1), 69-80.

For over a century, the practice of deflighting has taken place in zoological collections in order to ensure birds remain in open-topped enclosures. Over time, efforts have been made to improve or develop new (surgical)...

Lowe, G., McCane, B., Sutherland, M. et al. 2020. Automated collection and analysis of infrared thermograms for measuring eye and cheek temperatures in calves. Animals 10(2), 292.

As the reliance upon automated systems in the livestock industry increases, technologies need to be developed which can be incorporated into these systems to monitor animal health and welfare. Infrared thermography (IRT) is one such...

Shepley, E., Lensink, J., Leruste, H. et al. 2020. The effect of free-stall versus strawyard housing and access to pasture on dairy cow locomotor activity and time budget. Applied Animal Behaviour Science 224, 104928.

Dairy housing systems can have major implications on how freely cows move within their environment and how fully they can express their behavioral repertoire, impacting overall welfare. To ensure housing systems are meeting the needs...

Ross, S. R., Leinwand, J. G. 2020. A review of research in primate sanctuaries. Biology Letters 16(4), 1620200033.

While non-human primate studies have long been conducted in laboratories, and more recently at zoological parks, sanctuaries are increasingly considered a viable setting for research. Accredited sanctuaries in non-range countries house thousands of primates formerly...

O’Leary, N. W., Byrne, D. T., Garcia, P. et al. 2020. Grazing cow behavior’s association with mild and moderate lameness. Animals 10(4), 661.

Accelerometer-based mobility scoring has focused on cow behaviors such as lying and walking. Accuracy levels as high as 91% have been previously reported. However, there has been limited replication of results. Here, measures previously identified...

Pinheiro Machado, T. M., Pinheiro Machado Filho, L. C., Daros, R. R. et al. 2020. Licking and agonistic interactions in grazing dairy cows as indicators of preferential companies. Applied Animal Behaviour Science 227, 104994.

The quality of the social environment should be studied as one of the welfare components of dairy herds. Licking and preference between cows are important socio-positive experiences in this context.The aims of this study were...

Reinhardt, V. (ed.) 2020. It’s Okay to Cry - Discussions by the Laboratory Animal Refinement & Enrichment Forum [LAREF], Volume V. Animal Welfare Institute, Washington, DC.

This is the 5th volume of selected discussions that took place on the electronic Laboratory Animal Refinement & Enrichment Forum between February 2016 and December 2019. The forum was created in October 2002; it allows...

Bill, J., Rauterberg, S. L., Herbrandt, S. et al. 2020. Agonistic behavior and social hierarchy in female domestic rabbits kept in semi-groups. Journal of Veterinary Behavior 38, 21-31.

In semi-natural mixed-sex groups, rabbits (Oryctolagus cuniculus) organize their social life by forming a hierarchy, which is characterized by linearity and stability. Compared to the natural environment, many factors are different in contemporary breeding systems...

Bernhard, J. K., Vidondo, B., Achermann, R. L. et al. 2020. Slightly and moderately lame cows in tie stalls behave differently from non-lame controls. A matched case-control study. Frontiers in Veterinary Science 7, 594825.

Lameness affects dairy cows worldwide and is usually associated with pain. Behavioral differences in lame compared to non-lame tie-stall-housed dairy cows might be less pronounced than in free-stall-housed, since the principle demands to a cow's...

Contreras-Aguilar, M. D., Vallejo-Mateo, P. J., Želvytė, R. et al. 2020. Changes in saliva analytes associated with lameness in cows: A pilot study. Animals 10(11), 2078.

The possible changes in a panel of 21 salivary analytes on a population of cows with lameness before and after treating lameness by hoof trimming were analyzed. Then, the analytes that showed significant changes were...

Cortese, M., Brščić, M., Ughelini, N. et al. 2020. Effectiveness of stocking density reduction on mitigating lameness in a Charolais finishing beef cattle farm. Animals 10(7), 1147.

This study aimed at assessing whether a reduction in stocking density (SKD) would mitigate lameness and positively affect the performance and health of Charolais bulls in an Italian commercial farm. Bulls were distributed in groups...

de Freslon, I., Peralta, J. M., Strappini, A. C. et al. 2020. Understanding allogrooming through a dynamic social network approach: An example in a group of dairy cows. Frontiers in Veterinary Science 7, 535.

For gregarious species such as domestic cattle, the social environment is a very important determinant of their welfare and fitness. Understanding the complexity of cows' relationships can assist the development of management practices that are...

Sadiq, M. B., Ramanoon, S. Z., Mansor, R. et al. 2020. Claw trimming as a lameness management practice and the association with welfare and production in dairy cows. Animals 10(9), 1515.

Lameness resulting from claw lesions remains a pressing welfare issue in dairy cows. Claw trimming (CT) is a common practice for prevention and management of clinically lame cows. This review summarizes the results of studies...

Oehm, A. W., Jensen, K. C., Tautenhahn, A. et al. 2020. Factors associated with lameness in tie stall housed dairy cows in south Germany. Frontiers in Veterinary Science 7, 601640.

Lameness remains a major concern for animal welfare and productivity in modern dairy production. Even though a trend toward loose housing systems exists and the public expects livestock to be kept under conditions where freedom...

Harper, S. B., Bayne, K., Anderson, K. E. 2020. High-containment agriculture animal research: An AAALAC International perspective. ILAR Journal 61(1), 10-17.

Institutions that conduct high-containment agricultural research involving domestic livestock represent a specialized category of programs that are accredited by AAALAC International. The accreditation process includes a comprehensive assessment of the overall program of animal care...

Nawroth, C., Gygax, L. 2020. The legislative, ethical, and conceptual importance of replicability in farm animal welfare science. agriRxiv 2020, 20203211980.

In this commentary, we discuss three replicability issues that are specifically relevant to research regarding farm animal welfare: (1) Legislative action, and its potential economic consequences, should derive from robust and replicable research to benefit...

Nagy-Reis, M. B., Mendonça-Furtado, O., Resende, B. 2019. Do social factors related to allostatic load affect stereotypy susceptibility? Management implications for captive social animals. Animal Welfare 28(2), 183-190.

Stereotypies are frequently associated with sub-optimal captive environments and are used as welfare indicators. However, susceptibility to stereotypy can vary across individuals of the same group. As such, identifying which individuals are more susceptible to...

Bill, J., Rauterberg, S. L., Stracke, J. et al. 2019. Prevalence and severity of tail lesions as a possible welfare indicator for rabbit does. Animal Welfare 28(4), 511-518.

The impact of behavioural disorders on animal welfare in modern animal husbandry has been much debated. While other abnormal behaviours have been explored at length, there are a paucity of studies on tail-biting in rabbits...

Barreiro-Vázquez, J. D., Miranda, M., Barreiro-Vilanova, M. I. et al. 2019. Characterization of the normal portal and hepatic blood flow of adult Holstein-Friesian cows. Animals 9(6), 386.

Knowledge of physiological portal and hepatic blood flow in cattle is essential for the use of Doppler ultrasound for diagnostic purposes. In this paper, we describe a protocol for the systematic ultrasonography evaluation of the...

Lowe, G., Sutherland, M., Waas, J. et al. 2019. Infrared thermography—A non-invasive method of measuring respiration rate in calves. Animals 9(8), 535.

Respiration rate (RR) is commonly used to assess states of cattle health and welfare such as pain, stress and disease. Traditionally, RR is measured by counting flank movements, a method often considered to be labour-intensive...

Baker, S. W., Tucci, E. R., Felt, S. A. et al. 2019. A bird's-eye view of regulatory, animal care, and training considerations regarding avian flight research. Comparative Medicine 69(3), 169–178.

A thorough understanding of how animals fly is a central goal of many scientific disciplines. Birds are a commonly used model organism for flight research. The success of this model requires studying healthy and naturally...

Association of Primate Veterinarians. 2019. Association of Primate Veterinarians’ guidelines for nonhuman primate restraint. JAALAS 58(3), 282-284.

The Association of Primate Veterinarians (APV) recognizes that several forms of restraint, including physical and chemical, are necessary for the safe handling of nonhuman primates (NHPs). The following guidelines aim to provide information to researchers...