Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Association of Primate Veterinarians. 2019. Association of Primate Veterinarians’ guidelines for nonhuman primate restraint. JAALAS 58(3), 282-284.

The Association of Primate Veterinarians (APV) recognizes that several forms of restraint, including physical and chemical, are necessary for the safe handling of nonhuman primates (NHPs). The following guidelines aim to provide information to researchers...

Chatigny, F. 2019. The controversy on fish pain: A veterinarian’s perspective. Journal of Applied Animal Welfare Science 22(4), 400-410.

Fish welfare is still a relatively new field. As such, regulations and protocols to ensure fish welfare are currently limited and vary considerably in different jurisdictions. This is in part because of the ongoing controversy...

Domingues, R. R., Garrone-Neto, D., Hilsdorf, A. W. S. et al. 2019. Use of mucus as a non-invasive sampling method for DNA barcoding of stingrays and skates (batoid elasmobranchs). Journal of Fish Biology 94(3), 512-516.

In this study we tested the use of mucus from five species of Neotropical marine batoid elasmobranchs to extract genomic DNA for barcoding and phylogenetic analysis. The DNA from all individuals sampled was successfully amplified...

Sloman, K, A., Bouyoucos, I. A., Brooks, E. J. et al. 2019. Ethical considerations in fish research. Journal of Fish Biology 94(4), 556-577.

In this review, we focus primarily on the refinement of common methods used in fish research based on emerging knowledge with the aim of improving the welfare of fish used in scientific studies. We consider...

Solås, M. R., Skoglund, H., Salvanes, A. G. V. 2019. Can structural enrichment reduce predation mortality and increase recaptures of hatchery-reared Atlantic salmon Salmo salar L. fry released into the wild? Journal of Fish Biology 95(2), 575-588.

Captive-reared fish often have poor survival in the wild and may fail to boost threatened populations. Enrichment during the nursery period can in some circumstances generate a broader behavioural repertoire than conventional hatchery production. Yet...

Watz, J. 2019. Structural complexity in the hatchery rearing environment affects activity, resting metabolic rate and post-release behaviour in brown trout Salmo trutta. Journal of Fish Biology 95(2), 638-641.

The effects of structural enrichment in the hatchery rearing environment of brown trout Salmo trutta was linked to post-release performance. Enrichment resulted in reduced swimming activity scored in an open field test and reduced movement...

Animal Welfare Institute. 2019. A new beginning for retired laboratory rabbits. Animal Welfare Institute (AWI) Quarterly 68(4) Winter, 10-11.

This article describes the rehoming of 10 laboratory female rabbits now living as a group in a private shelter.

Martins, T., Valentim, A., Pereira, N. et al. 2019. Anaesthetics and analgesics used in adult fish for research: A review. Laboratory Animals 53(4), 325–341.

The number of fish used in research has increased in the last decades. Anaesthesia is required when fish must be held immobile and it is crucial to promote fish welfare, because these vertebrates can show...

Cox, R. J., Nol, P., Ellis, C. K. et al. 2019. Research with agricultural animals and wildlife. ILAR Journal 60(1), 66-73.

In fiscal year 2016, agricultural animals such as swine, sheep, goats, and cattle represented 10% of the 820 812 animals used in USDA-regulated research. In addition to traditional agricultural animals, research studies using captive wildlife...

Bartley, J. 2019. Darwin’s fishes?: Keeping Malawi cichlids. Animal Technology and Welfare 18(3), 199-202.

This poster will provide information on the cichlids, including their dietary and husbandry requirements and the breeding of these animals.

McMillan, F. D. (ed). 2019. Mental Health and Well-being in Animals (2nd ed). CABI, Wallingford, UK.

This second edition is fully revised, expanded, and comprehensively updated with the most current knowledge about the full array of mental health issues seen in animals. Written by key opinion leaders, internationally-recognized experts and specialists...

Fischer, C. P., Romero, L. M. 2019. Chronic captivity stress in wild animals is highly species-specific. Conservation Physiology 7(1), coz093.

Wild animals are brought into captivity for many reasons—conservation, research, agriculture and the exotic pet trade. While the physical needs of animals are met in captivity, the conditions of confinement and exposure to humans can...

Lambert, C. J., Freshner, B. C., Chung, A. et al. 2018. An automated system for rapid cellular extraction from live zebrafish embryos and larvae: Development and application to genotyping. PLOS ONE 13(3), e0193180.

Zebrafish are a valuable model organism in biomedical research. Their rapid development, ability to model human diseases, utility for testing genetic variants identified from next-generation sequencing, amenity to CRISPR mutagenesis, and potential for therapeutic compound...

Peric, T., Comin, A., Corazzin, M., et al. 2018. Hair cortisol concentrations in New Zealand white rabbits subjected to surgery. Animal Welfare 27(1), 13-20.

The aim of this study was to assess hair cortisol concentrations in New Zealand white rabbits (Oryctolagus cuniculus) that were subjected to relocation and surgery to evaluate HPA-axis activity; in addition, we used this marker...

Cooke, G. M. 2018. Use of a translucent refuge for Xenopus tropicalis with the aim of improving welfare. Laboratory Animals 52(3), 304-307.

Xenopus tropicalis is an increasingly important animal model in a variety of biological research fields. In many countries legislation exists to promote and increase welfare wherever possible, including the ability to view animals during daily...

Smith, B. D., Vail, K. J., Carroll, G. L. et al. 2018. Comparison of etomidate, benzocaine, and MS222 anesthesia with and without subsequent flunixin meglumine analgesia in African clawed frogs (Xenopus laevis). JAALAS 57(2), 202-209.

Often few alternative anesthetics for exotic species are available, due to the small numbers of these animals used in research. In this study, we evaluated the depth and duration of anesthesia in Xenopus laevis after...

Chatigny, F., Creighton, C. M., Stevens, E. D. 2018. Updated review of fish analgesia. JAALAS 57(1), 5-12.

Analgesics are an integral part of routine pain management in mammals, yet their use in fish is still limited. Some recommendations on the use of analgesics in fish are currently in the literature; however, information...

Hawkins, P., McBride, A., Paiba, G. et al. 2018. Report of the 2017 RSPCA/UFAW Rodent and Rabbit Welfare Group meeting. Animal Technology and Welfare 17(2), 75-83. [Meeting Report]

The RSPCA/UFAW Rodent (and now Rabbit) Welfare Group held a one-day meeting on 14 November 2017 in Weybridge, UK. The first session addressed meeting animals' needs and aiming for a 'good life', with the needs...

Pearson, K., Gant, J. 2018. Improving rabbit enrichment: Developing a rolling enrichment plan. Animal Technology and Welfare 17(2), 121-123.

A three-week enrichment preference study trialling different substrates, food and pen structures was carried out in three, group-housed female New Zealand White Rabbits (NZW). Preference results: structural - rabbits spent the most time with a...

Graham, C., von Keyserlingk, M. A. G., Franks, B. 2018. Zebrafish welfare: Natural history, social motivation and behaviour. Applied Animal Behaviour Science 200, 13-22.

Zebrafish are now one of the most used animal model species in scientific research worldwide. Our current knowledge of wild zebrafish is limited to an estimated range of their natural habitats and their tendencies to...

Franks, B., Graham, C., Von Keyserlingk, M. A. G. 2018. Is heightened-shoaling a good candidate for positive emotional behavior in zebrafish? Animals 8(9), 152.

Zebrafish, a highly-social species of freshwater fish, are widely studied across many fields of laboratory science including developmental biology, neuroscience, and genomics. Nevertheless, as standard housing for zebrafish typically consists of small and simplistic environments...

Darbyshire, A. K., Salleng, K., Chen,P. 2018. The shocking lives of electric eels. Laboratory Animal Science Professional 6(1) (March), 14-18.

Electric eels (Electrophorus electricus) are a unique species used for behavioral research in the Vanderbilt Animal Care and Use Program. Few resources are available to describe the housing and handling of this species in captivity...

Maia, C. M., Volpato, G. L. 2017. Preference index supported by motivation tests in Nile tilapia. PLOS ONE 12(4), e0175821.

The identification of animal preferences is assumed to provide better rearing environments for the animals in question. Preference tests focus on the frequency of approaches or the time an animal spends in proximity to each...

Sommerville, R., Ruiz, R., Averós, X. 2017. A meta-analysis on the effects of the housing environment on the behaviour, mortality, and performance of growing rabbits. Animal Welfare 26(2), 223-238.

Although the number of rabbits (Oryctolagus cuniculus) produced in Europe is important, they are under-represented in welfare research. Studies on the effects of housing conditions have focused on performance and mortality. We conducted a meta-analysis...

Tsang, B., Zahid, H., Ansari, R. et al. 2017. Breeding zebrafish: A review of different methods and a discussion on standardization. Zebrafish 14(6), 561-573.

In recent years, a rapidly increasing number of scientific papers have been published that utilize zebrafish (Danio rerio) as an alternative model organism in the study of a wide range of biological phenomena from cancer...