Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Bill, J., Rauterberg, S. L., Stracke, J. et al. 2019. Prevalence and severity of tail lesions as a possible welfare indicator for rabbit does. Animal Welfare 28(4), 511-518.

The impact of behavioural disorders on animal welfare in modern animal husbandry has been much debated. While other abnormal behaviours have been explored at length, there are a paucity of studies on tail-biting in rabbits...

Lutz, J., Burla, J.-B., Gygax, L. et al. 2019. Horned and dehorned dairy cows differ in the pattern of agonistic interactions investigated under different space allowances. Applied Animal Behaviour Science 218, 104819.

Limited space in dairy cattle farming is associated with frequent encounters between cows, often resulting in agonistic interactions and injuries, especially in horned cows. Previous studies with dairy cows investigated space allowances in the waiting...

Lee, L. Y., Lee, D., Ryu, H. et al. 2019. Capnography-guided endotracheal intubation as an alternative to existing intubation methods in rabbits. JAALAS 58(2), 240-245.

Rabbits provide a unique challenge for routine endotracheal intubation in clinical practice because of various distinctive anatomic and physiologic features. Many previously proposed methods for endotracheal intubation in rabbits are limited by several factors, including...

Association of Primate Veterinarians. 2019. Association of Primate Veterinarians’ guidelines for nonhuman primate restraint. JAALAS 58(3), 282-284.

The Association of Primate Veterinarians (APV) recognizes that several forms of restraint, including physical and chemical, are necessary for the safe handling of nonhuman primates (NHPs). The following guidelines aim to provide information to researchers...

Cox, R. J., Nol, P., Ellis, C. K. et al. 2019. Research with agricultural animals and wildlife. ILAR Journal 60(1), 66-73.

In fiscal year 2016, agricultural animals such as swine, sheep, goats, and cattle represented 10% of the 820 812 animals used in USDA-regulated research. In addition to traditional agricultural animals, research studies using captive wildlife...

Santurtun, E., Broom, D. M., Phillips, C. J. C. 2018. A review of factors affecting the welfare of Atlantic salmon (Salmo salar). Animal Welfare 27(3), 193-204.

In the expanding salmon industry, many farmers use production methods that could result in poor welfare of the fish at various points of their lifecycle. We have reviewed methods used for producing salmon for food...

Ekman, L., Nyman, A.-K., Landin, H. et al. 2018. Hock lesions in dairy cows in freestall herds: A cross-sectional study of prevalence and risk factors. Acta Vererinaria Scandinavica 60(1), 47.

Hock lesions (HL) in dairy cows are a common animal welfare problem in modern dairy production with freestall housing systems, but there are no large-scale studies addressing its epidemiology in Sweden. The aims of this...

Champneys, T., Castaldo, G., Consuegra, S., et al. 2018. Density dependent changes in neophobia and stress-coping styles in the world’s oldest farmed fish. Royal Society Open Science 5(12), 181473.

Farmed fish are typically reared at densities much higher than those observed in the wild, but to what extent crowding results in abnormal behaviours that can impact welfare and stress coping styles is subject to...

Witaifi, A. A., Ali, A. B. A., Siegford, J. M. 2018. Stall and feed bunk stocking rates impact cows' diurnal behavior and activity in automatic milking system farms. Journal of Veterinary Behavior 24, 48-55.

High stall stocking rates have been shown to alter behavior of cows in parlor-milked systems; however, no studies have examined stocking rates for cows milked with automatic milking systems (AMSs). Therefore, we examined the influence...

Vázquez Diosdado, J. A., Barker, Z. E., Hodges, H. R. et al. 2018. Space-use patterns highlight behavioural differences linked to lameness, parity, and days in milk in barn-housed dairy cows. PLOS ONE 13(12), e0208424.

Lameness is a key health and welfare issue affecting commercial herds of dairy cattle, with potentially significant economic impacts due to the expense of treatment and lost milk production. Existing lameness detection methods can be...

Buisman, L. L., Alsaaod, M., Bucher, E. et al. 2018. Objective assessment of lameness in cattle after foot surgery. PLOS ONE 13(12), e0209783.

Assessment of lameness in cattle after foot surgery is important to monitor the recovery period, to improve the long-term success and the cows’ welfare. This longitudinal multicenter retrospective study was carried out to evaluate the...

Ekesbo, I., Gunnarsson, S. 2018. Farm Animal Behaviour: Characteristics for Assessment and Welfare (2nd ed). CABI, Wallingford, UK.

Completely updated and revised, and with a new author team, this second edition of Farm Animal Behaviour continues to provide essential information on normal and stereotypic behaviors in a wide variety of farm animals to...

Editorial. 2017. Reducing lameness in sheep: new approach recommended. Veterinary Record 180(23), 555.

Farm vets can recommend that sheep farmers stop routine foot trimming to treat lameness in their flocks. Instead, they should treat cases of footrot, the major cause of lameness, with an injectable antibiotic and a...

Miranda, A., Pego, J. M., Correia-Pinto, J. 2017. Animal facility videoendoscopic intubation station: Tips and tricks from mice to rabbits. Laboratory Animals 51(2), 204-207.

Endotracheal intubation of laboratory animals is a common procedure shared by several research fields for different purposes, such as mechanical ventilation of anaesthetized animals, instillation of cytotoxic nanoparticles, infectious agents or tumour cells for induction...

McMillan, J. L., Bloomsmith, M. A., Prescott, M. J. 2017. An international survey of approaches to chair restraint of nonhuman primates. Comparative Medicine 67(5), 442–451.

Specifically designed restraint chairs are the preferred method of restraint for research studies that require NHP to sit in place for sustained periods of time. In light of increasing emphasis on refinement of restraint to...

Foditsch, C., Oikonomou, G., Machado, V. S. et al. 2016. Lameness prevalence and risk factors in large dairy farms in upstate New York. Model development for the prediction of claw horn disruption lesions. PLOS ONE 11(1), e0146718.

The main objectives of this prospective cohort study were a) to describe lameness prevalence at drying off in large high producing New York State herds based on visual locomotion score (VLS) and identify potential cow...

Sánchez-Muros, M. J., Sánchez, B., Barroso, F. G. et al. 2016. Effects of culture densities on feed demand, behavioural tests and on the hepatic and cerebral oxidative status in tilapia (Oreochromis sp.). Applied Animal Behaviour Science 185, 137-145.

The present study examines whether fish density affects behavioural tests, feed demand, and different parameters indicative of the oxidative status of the liver and brain of Orechromis sp. to identify welfare indicators for fish culturing...

Pater, C. S. 2013. Rabbit hypnosis as a form of mild restraint: A forgotten method. American Association for Laboratory Animal Science [AALAS] Meeting Official Program, 615 (Abstract #PS42).

Rabbit hypnosis or “trancing” was a common restraint technique used for minor procedures such as: nail clipping, tooth trimming, eye exams, and subcutaneous injections. In years past the technique was originally used on pet rabbits...

Ekesbo, I. 2011. Sheep. In: Farm Animal Behavior: Characteristics for Assessment of Health and Welfare, 1st edition. Fraser, A. F. , Broom, D. M. (ed). CABI, Oxfordshire, UK. pp. 82-92.

Each chapter follows a consistent pattern describing the behavioral characteristics of the species featured. Reference is made to the natural state before domestication, leading us through the various changes to the present, demonstrating along the...

Moreau, E. 2010. To squeeze or not to squeeze? A Discussion on LAREF, September, 2009. Laboratory Primate Newsletter 49(2), 3-4.

The discussion was started by the following questions: "Is the squeeze-back mechanism more or less stressful than the pole and collar system for removing a macaque from his cage for an IM (intramuscular) injection?" and...

Nelson, E. A., Keller, G. L., Mitchell, T. W. et al. 2010. A jugular bleeding technique in rabbits. Lab Animal 39(1), 17-22.

When studying pharmacokinetics in rabbits, researchers must often take multiple blood samples from conscious rabbits. Researchers usually collect these samples via the auricular vein, typically through a port or an indwelling catheter. The authors have...

Branson, E. J. (Ed.) 2008. Fish Welfare. Blackwell Publishing Ltd: Oxford, UK, 300 p.

Fish have the same stress response and powers of nociception as mammals. Their behavioural responses to a variety of situations suggest a considerable ability for higher level neural processing – a level of consciousness equivalent...

Onbasilar, E. E., Onbasilar, Í. 2007. Effect of cage density and sex on growth, food utilization and some stress parameters of young rabbits. Scandinavian Journal of Laboratory Animal Science 34(3),189-195.

The aim of the experiment was to study the effects of cage density (1, 3 and 5 rabbits per cage) and sex (male and female) on stress parameters of young rabbits. A total of 90...

Barley, J., Mikkelsen, L. F., Francis, R. et al. 2007. Enforced restraint of rodents: A discussion by the Refinement & Enrichment Forum. Animal Technology and Welfare 6(1), 11-13.

The question was asked: "Rodents are often restrained for data collection procedures, such as blood collection and injection, by coaxing them into tubes, for example syringe cylinders or perspex tubes. What can be done to...

Conour, L. A., Murray, K. A., Brown, M. J. 2006. Preparation of animals for research -- Issues to consider for rodents and rabbits. ILAR Journal 47(4), 283-293.

This article provides details to consider when preparing to use animals in biomedical research. The stress of transport and receipt of animals into a new environment mandate the need for a period of stabilization and...