Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Brown, J. L., Carlstead, K., Bray, J. D. et al. 2019. Individual and environmental risk factors associated with fecal glucocorticoid metabolite concentrations in zoo-housed Asian and African elephants. PLOS ONE 14(9), e0217326.

A recent large-scale welfare study in North America involving 106 Asian (Elephas maximus) and 131 African (Loxodonta africana) elephants at 64 accredited facilities identified links (i.e., risk factors) between zoo environmental factors and a number...

Gourlan, A. T., Douay, G., Telouk, P. 2019. Copper isotopes as possible neoplasia biomarkers in captive wild felids. Zoo Biology 38(4), 371-383.

The longevity of zoo animals is increasing due to continuous improvement in husbandry and veterinary medicine. However, increasing age is correlated to a higher prevalence of neoplasia. Despite tremendous improvement in diagnoses and monitoring capacities...

Message, R., Greenhough, B. 2019. “But it’s just a fish”: Understanding the challenges of applying the 3Rs in laboratory aquariums in the UK. Animals 9(12), 1075.

Adopting a social science perspective and qualitative methodology on the problem of laboratory fish welfare, this paper examines some underlying social factors and drivers that influence thinking, priorities and implementation of fish welfare initiatives and...

McMillan, F. D. (ed). 2019. Mental Health and Well-being in Animals (2nd ed). CABI, Wallingford, UK.

This second edition is fully revised, expanded, and comprehensively updated with the most current knowledge about the full array of mental health issues seen in animals. Written by key opinion leaders, internationally-recognized experts and specialists...

Schiffmann, C., Clauss, M. 2019. Impact of a new exhibit on stereotypic behavior in an elderly captive African elephant. Journal of Zoo and Aquarium Research 7(1), 37-43.

Stereotypic behavior in zoo elephants is considered an indicator of impaired welfare. The underlying causes are diverse and many aspects are still unexplored. Nevertheless, many zoological institutions take huge efforts to improve the well-being of...

Santurtun, E., Broom, D. M., Phillips, C. J. C. 2018. A review of factors affecting the welfare of Atlantic salmon (Salmo salar). Animal Welfare 27(3), 193-204.

In the expanding salmon industry, many farmers use production methods that could result in poor welfare of the fish at various points of their lifecycle. We have reviewed methods used for producing salmon for food...

Williams, E., Chadwick, C. L., Yon, L. et al. 2018. A review of current indicators of welfare in captive elephants (Loxodonta africana and Elephas maximus). Animal Welfare 27(3), 235-249.

Concerns over elephant welfare in UK zoos have implications for their future in captivity. To monitor improvements made to elephant welfare in UK zoos, non-invasive, valid and reliable indicators of welfare are needed. Using a...

Clegg, I. 2018. Cognitive bias in zoo animals: An optimistic outlook for welfare assessment. Animals 8(7), 104.

Cognitive bias testing measures how emotional states can affect cognitive processes, often described using the “glass half-full/half-empty” paradigm. Classical or operant conditioning is used to measure responses to ambiguous cues, and it has been reported...

Wolfensohn, S., Shotton, J., Bowley, H. et al. 2018. Assessment of welfare in zoo animals: Towards optimum quality of life. Animals 8(7), 110.

Zoos are required to maintain a high standard of animal welfare, and this can be assessed using a combination of resource-based and animal-based indices usually divided into behavioural indicators, physiological indicators and clinical/pathological signs. Modern...

Chatigny, F., Creighton, C. M., Stevens, E. D. 2018. Updated review of fish analgesia. JAALAS 57(1), 5-12.

Analgesics are an integral part of routine pain management in mammals, yet their use in fish is still limited. Some recommendations on the use of analgesics in fish are currently in the literature; however, information...

Phillips, K.A., Tukan, A. N., Rigodanzo, A. D. et al. 2018. Quantification of hair cortisol concentration in common marmosets (Callithrix jacchus) and tufted capuchins (Cebus apella). American Journal of Primatology 80(7), e22879.

Quantifying cortisol concentration in hair is a non‐invasive biomarker of long‐term hypothalamic‐pituitary‐adrenal (HPA) activation, and thus can provide important information on laboratory animal health. Marmosets (Callithrix jacchus) and capuchins (Cebus apella) are New World primates...

Chotard, H., Ioannou, S., Davila-Ross, M. 2018. Infrared thermal imaging: Positive and negative emotions modify the skin temperatures of monkey and ape faces. American Journal of Primatology 80(5), e22863.

Facial thermography has enabled researchers to noninvasively and continuously measure the changes of a range of emotional states in humans. The present work used this novel technology to study the effect of positive and negative...

Wiley, J. N., Leeds, A., Carpenter, K. D. et al. 2018. Patterns of wounding in hamadryas baboons (Papio hamadryas) in North American zoos. Zoo Biology 37(2), 74–79.

In North American zoos, hamadryas baboons (Papio hamadryas) have traditionally been housed as single one‐male units (single male groups). In recent years, efforts have been made to house hamadryas in groups composed of multiple one‐male...

Coke, C., Skoumbourdis, E., Rodgers, J. C. et al. 2018. Blunting/cutting canines of adult male monkeys: A discussion by the Laboratory Animal Refinement & Enrichment Forum. Animal Technology & Welfare 17(2), 105-107.

"When you keep adult Rhesus macaque (Macaca mulatta) males, adult Cynomolgus (Macaca fascicularis) males or adult Vervet males (Chlorocebus pygerythrus), in the same enclosure, is it advisable to have the canines of the males blunted...

Zomeño, C., Birolo, M., Gratta, F. et al. 2018. Effects of group housing system, pen floor type, and lactation management on performance and behaviour in rabbit does. Applied Animal Behaviour Science 203, 55-63.

This work aimed at evaluating the effects of housing system, pen floor type, and lactation management on rabbit doe and kit performance throughout a reproductive cycle, including categorization of aggressiveness and injuries. Forty multiparous pregnant...

Tomeo, O. B., Sosnowski, M. J., Benitez, M. E. et al. 2018. The relationship between self-directed anxiety behaviors and cortisol in socially housed capuchin monkeys (Cebus [Sapajus] apella). American Journal of Primatology 80(S1), 32 (40th Meeting of the American Society of Primatologists Scientific Program, Abstract #64).

Non‐human primates are excellent models for the study of human social anxiety. Both humans and non‐human primates form complex relationships with others, and exhibit signs of distress when those relationships become unstable. Self‐directed behaviors, such...

Thurston, S., Burlingame, L., Lester, P. A. et al. 2018. Methods of pairing and pair maintenance of New Zealand white rabbits (Oryctolagus Cuniculus) via behavioral ethogram, monitoring, and interventions. JoVE (Journal of Visualized Experiments) 133, e57267.

Though European rabbits are a social species, socially housing them can be challenging. Therefore, there must be a thorough understanding of behaviors and social structures of pair-housed laboratory rabbits. Here we present a protocol to...

Wolfe, A. M., Rahman, M., McFadden, D. G. et al. 2018. Refinement and successful implementation of a scoring system for myxomatosis in a susceptible rabbit (Oryctolagus cuniculus) model. Comparative Medicine 68(4), 280–285.

Myxoma virus is a member of Leporipoxviridae whose tropism is tightly restricted to lagomorphs. In susceptible Oryctolagus rabbits, the virus causes a highly lethal disease known as myxomatosis, which begins as a localized infection but...

Camacho, J., Morris, J. 2018. Breaking down the barriers: Social housing of previously single-housed adult baboons. Laboratory Animal Science Professional 5(4) (December), 55-57.

An important responsibility of each institution is to challenge preconceived notions that may limit social housing. At our institution’s center for comparative medicine (CCM), we recently challenged a historical mindset that 2 large (>25 kg)...

Wilson, L. A., Miller, J. J., Work, R. K. et al. 2018. Novel diet regimen for rabbits in a compromised oral wound healing study. Laboratory Animal Science Professional 6(1) (March), 49-51.

Rabbits are known to be finicky about food and will reject it based upon several factors: odor, texture, form, or method of presentation. It can be an even greater challenge to get rabbits to eat...

Unakafov, A. M., Möller, S., Kagan, I. et al. 2018. Using imaging photoplethysmography for heart rate estimation in non-human primates. PLOS ONE 13(8), e0202581.

For humans and for non-human primates heart rate is a reliable indicator of an individual’s current physiological state, with applications ranging from health checks to experimental studies of cognitive and emotional state. In humans, changes...

Norton, B. B., Tunseth, D., Holder, K. et al. 2018. Causes of morbidity in captive African lions (Panthera leo) in North America, 2001–2016. Zoo Biology 37(5), 354-359.

The lion (Panthera leo) is an iconic resident of zoos and wild animal parks throughout the world. Regular assessment of the morbidity of captive lions is necessary to address wellness concerns and improve the healthcare...

Morfeld, K. A., Brown, J.L. 2017. Metabolic health assessment of zoo elephants: Management factors predicting leptin levels and the glucose-to-insulin ratio and their associations with health parameters. PLOS ONE 12(11), e0188701.

Screening for metabolic-related health problems can enhance animal welfare, so the purpose of this study was to conduct the first metabolic health assessment of zoo elephants and use epidemiological methods to determine how factors in...

Chadwick, C. L., Williams, E., Asher, L. et al. 2017. Incorporating stakeholder perspectives into the assessment and provision of captive elephant welfare. Animal Welfare 26(4), 461-472.

Recent concerns over the welfare of elephants in UK zoos have implications for their future in captivity, and it is clear that improvements in welfare should be made. Evidence suggests that the knowledge of experienced...

Miranda, A., Pego, J. M., Correia-Pinto, J. 2017. Animal facility videoendoscopic intubation station: Tips and tricks from mice to rabbits. Laboratory Animals 51(2), 204-207.

Endotracheal intubation of laboratory animals is a common procedure shared by several research fields for different purposes, such as mechanical ventilation of anaesthetized animals, instillation of cytotoxic nanoparticles, infectious agents or tumour cells for induction...