Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Stevens, C. H., Croft, D. P., Paull, G. C. et al. 2017. Stress and welfare in ornamental fishes: What can be learned from aquaculture? Journal of Fish Biology 91(2), 409-428.

The ornamental fish trade is estimated to handle up to 1.5 billion fishes. Transportation and handling of fishes imposes a range of stressors that can result in mortality at rates of up to 73%. Given...

Cooper, J. E., Hull, G. 2017. Gorilla Pathology and Health: With a Catalogue of Preserved Materials. Elsevier/Academic Print, London, UK.

Gorilla Pathology and Health: With a Catalogue of Preserved Materials consists of two cross-referenced parts. The first, the book itself, is a review of pathological changes and tissue responses in gorillas (Gorilla gorilla and G...

Miller, A. L., Golledge, H. D. R., Leach, M. C. 2016. The influence of isoflurane anaesthesia on the rat grimace scale. PLOS ONE 11(11), e0166652.

Over 234,000 rats were used in regulated procedures in the UK in 2014, many of which may have resulted in some degree of pain. When using animals in research, there is an ethical and legal...

Moheban, A. A., Chang, H. H., Havton, L. A. 2016. The suitability of propofol compared with urethane for anesthesia during urodynamic studies in rats. JAALAS 55(1), 89–94.

Urethane anesthesia preserves many reflex functions and is often the preferred anesthetic for urodynamic studies in rats. Because of the toxicity profile of urethane, its use as an anesthetic typically is limited to acute and...

O'Connell, C. P., Leurs, G. 2016. A minimally invasive technique to assess several life-history characteristics of the endangered great hammerhead shark Sphyrna mokarran. Journal of Fish Biology 88(3), 1257-1264.

A dorsal-fin photo-identification technique paired with a non-invasive parallel laser photogrammetry technique was used to non-invasively identify individual Sphyrna mokarran over time. Based on the data collected over a duration of 59 days, 16 different...

McEntee, D., Borg, K., Markiewicz, V. 2016. Establishment of a home-cage in vivo method of New Zealand white rabbit urine collection. Laboratory Animal Science Professional 4(4) (December), 44-46.

The most common methods for rabbit urine collection are newborn stroking, cystocentesis, and transfer to a metabolism cage.2 None of these options allow for a significant, quality amount of urine to be collected in vivo...

Caron, A., Lelong, C., Pascual, M. H. et al. 2015. Miniaturized blood sampling techniques to benefit reduction in mice and refinement in nonhuman primates: Application to bioanalysis in toxicity studies with antibody-drug conjugates. JAALAS 54(2), 145-152.

Minimizing the number of animals in regulatory toxicity studies while achieving study objectives to support the development of future medicines contributes to good scientific and ethical practices. Recent advances in technology have enabled the development...

Cloutier, S., Wahl, K. L., Panksepp, J. et al. 2015. Playful handling of laboratory rats is more beneficial when applied before than after routine injections. Applied Animal Behaviour Science 164, 81-90.

The ability of positive affective states to counteract negative states engendered by routine medical procedures remains poorly studied. In laboratory rats, positive affect typically associated with rough-and-tumble play can be induced through human “hand play”...

Pearson, B. L., Reeder, D. M., Judge, P. G. 2015. Crowding increases salivary cortisol but not self-directed behavior in captive baboons. American Journal of Primatology 77, 462-67.

Reduced space can lead to crowding in social animals. Crowding increases the risk of agonistic interactions that, in turn, may require additional physiological defensive coping mechanisms affecting health. To determine the stress induced from increased...

Bayne, K. A., Beaver, B. V., Mench, J. A. et al. 2015. Laboratory animal behavior. In: Laboratory Animal Medicine, 3rd edition. Fox, J. G., Anderson, L., Otto, G., et al. (eds). Elsevier, Inc., Amsterdam, NL. pp. 1617-1651.

The study of laboratory animal behavior has increased steadily over the last decade, with expanding emphasis on a variety of commonly used species. In the United States, this trend was initially focused on species for...

Lutz, C. K., Williams, P. C., Sharp, R. M. 2014. Abnormal behavior and associated risk factors in captive baboons (Papio hamadryas spp.). American Journal of Primatology 76(4), 355-361.

Abnormal behavior, ranging from motor stereotypies to self‐injurious behavior, has been documented in captive nonhuman primates, with risk factors including nursery rearing, single housing, and veterinary procedures. Much of this research has focused on macaque...

Nicholson, G., Sheldon, E. L., Hamilton, J. et al. 2014. Sand pools as a novel enrichment for rabbits. American Association for Laboratory Animal Science [AALAS] Meeting Official Program, 571. (Abstract #P83).

For anyone who has housed rabbits in an artificial plastic environment, what to provide as a nonfood enrichment can be an issue. Nonfood enrichment, or environmental enrichment, can be any toy, engaging sights or sounds...

Cloutier, S., Wahl, K., Baker, C. et al. 2014. The social buffering effect of playful handling on responses to repeated intraperitoneal injections in laboratory rats. JAALAS 53(2), 168-173.

Handling small animals for veterinary and experimental procedures can negatively affect animal wellbeing. We hypothesized that playful handling (tickling) would decrease stress associated with repeated injections in adult laboratory rats, especially those with prior tickling...

Hori, M., Yamada, K., Ohnishi, J. et al. 2014. Tickling during adolescence alters fear-related and cognitive behaviors in rats after prolonged isolation. Physiology & Behavior 131, 62-67.

Social interactions during adolescence are important especially for neuronal development and behavior. We recently showed that positive emotions induced by repeated tickling could modulate fear-related behaviors and sympatho-adrenal stress responses. In the present study, we...

Chelluri, G. I., Ross, S. R., Wagner, K. E. 2013. Behavioral correlates and welfare implications of informal interactions between caretakers and zoo-housed chimpanzees and gorillas. Applied Animal Behaviour Science 147, 306-315.

In captive animal facilities, human staff members are a relevant part of the animals’ social environment in addition to providing care and managing the social group. Structured, predictable interactions and relaxed, spontaneous contacts may all...

Cloutier, S., Baker, C., Wahl, K. et al. 2013. Playful handling as social enrichment for individually- and group-housed laboratory rats. Applied Animal Behaviour Science 143(2-4), 85-95.

Social housing is recommended for laboratory rats because they are highly social mammals but research constraints or medical issues often demand individual housing and, when social housing is practiced, it typically involves housing with only...

Costa, R., Tamascia, M. L., Nogueira, M. D. et al. 2012. Handling of adolescent rats improves learning and memory and decreases anxiety. JAALAS 51(5), 548-553.

Some environmental interventions can result in physiologic and behavioral changes in laboratory animals. In this context, the handling of adolescent or adult rodents has been reported to influence exploratory behavior and emotionality. Here we examined...

Cloutier, S., Panksepp, J., Newberry, R. C. 2012. Playful handling by caretakers reduces fear of humans in the laboratory rat. Applied Animal Behaviour Science 140(3-4), 161-171.

Handling of laboratory rats can increase physiological and emotional stress, leading to a fearful relationship with humans. We hypothesized that the affective quality of handling techniques used during routine care influences the animals' fear of...

Swennes, A. G., Alworth, L. C., Harvey, S. B. et al. 2011. Human handling promotes compliant behavior in adult laboratory rabbits. JAALAS 50(2), 41-45.

Routine laboratory procedures can be stressful for laboratory animals. We wanted to determine whether human handling of adult rabbits could induce a degree of habituation, reducing stress and facilitating research-related manipulation. To this end, adult...

Mathieu, C. 2011. Comparative analysis of blood sampling techniques in the rat. American Association for Laboratory Animal Science [AALAS] Meeting Official Program, 738 (Abstract #PS81).

Blood sampling is one of the most common procedures performed on laboratory animals as part of scientific research. As an ongoing commitment, our institution has identified a need to improve the current blood sampling method...

Coleman, K. 2011. Caring for nonhuman primates in biomedical research facilities: Scientific, moral and emotional considerations. American Journal of Primatology 73(3), 220-225.

Animal care for nonhuman primates (NHPs) in biomedical facilities has undergone major changes in the past few decades. Today, most primate facilities have dedicated and highly trained animal care technicians who go to great efforts...

Moreau, E. 2010. To squeeze or not to squeeze? A Discussion on LAREF, September, 2009. Laboratory Primate Newsletter 49(2), 3-4.

The discussion was started by the following questions: "Is the squeeze-back mechanism more or less stressful than the pole and collar system for removing a macaque from his cage for an IM (intramuscular) injection?" and...

Stewart, K. 2010. Effects of increased interaction between research rodents and their handlers. Animal Welfare Institute (AWI) Quarterly 59(1) Winter, 28-29.

We conclude that handling experimental animals more often than only at the time their cage is changes is beneficial.

Nelson, E. A., Keller, G. L., Mitchell, T. W. et al. 2010. A jugular bleeding technique in rabbits. Lab Animal 39(1), 17-22.

When studying pharmacokinetics in rabbits, researchers must often take multiple blood samples from conscious rabbits. Researchers usually collect these samples via the auricular vein, typically through a port or an indwelling catheter. The authors have...

Pearson, B. L., Judge, P., Reeder, D. M. 2008. Effectiveness of saliva collection and enzyme-immunoassay for the quantification of cortisol in socially housed baboons. American Journal of Primatology 70(12), 1145-1151.

Circulating cortisol levels are often used to assess the biological stress response in captive primates. Some methods commonly used to collect blood samples may alter the stress response. As such, noninvasive means to analyze cortisol...