Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Cohen, S., Ho, C. 2023. Review of rat (Rattus norvegicus), Mouse (mus musculus), Guinea pig (Cavia procellus), and rabbit (Oryctolagus cuniculus) indicators for welfare assessment. Animals 13(13), 2167.

The monitoring and assessment of animals is important for their health and welfare. The appropriate selection of multiple, validated, and feasible welfare assessment indicators is required to effectively identify compromises or improvements to animal welfare...

Howell-Stephens, J., Potratz, E. J., Brown, J. S. et al. 2023. Integrating measures of fecal glucocorticoid metabolites and giving-up densitites to assess adrenocortical activity and well-being in zoo-housed three-banded armadillos. Animals 13(12), 1975.

To monitor adrenocortical activity in zoo-housed species, we propose using physiological and behavioral indicators that are non-invasive and practical to implement. We explore this model in the southern three-banded armadillo (Tolypeutes matacus; armadillo), which is...

Hube, D., Bill, J., Knop, E. S. et al. 2023. Physical injuries and hair corticosterone concentration in rabbit kits from single- and group-housed does kept on a commercial farm. Animals 13(2), 196.

In intense breeding programs, rabbits are exposed to numerous stress factors which could affect their welfare and health. It has been suggested that group housing is more comfortable for does and similar to the living...

Krunt, O., Zita, L., Kraus, A. et al. 2023. Effects of genotype and housing system on rabbit does’ aggressive behaviors and injuries in smallholding conditions. Animals 13(8), 1357.

The objective of the study was to investigate the effects of housing (deep litter + concrete floor vs. deep litter + ground soil with the possibility to dig burrows), and genotype (Mecklenburg or Hyplus) on...

Morton, D. B. 2023. A model framework for the estimation of animal “suffering”: Its use in predicting and retrospectively assessing the impact of experiments on animals. Animals 13(5), 800.

This paper presents and illustrates, with a working example, a hypothesis for the assessment of ongoing severity before and during an experiment that will enable humane endpoints and intervention points to be applied accurately and...

Pallieres, C. G. D., Rose, P. E. 2023. Two’s company, three species is a crowd? A webcam-based study of the behavioural effects of mixed-species groupings in the wild and in the zoo. PLOS ONE 18(4), e0284221.

Mixed species exhibits in zoos are used to create larger, more stimulating environments to support naturalistic interactions between species. In the wild, mixed species groups are observed as having lower rates of vigilance, presumably due...

O’Brien, S. L., Cronin, K. A. 2023. Doing better for understudied species: Evaluation and improvement of a species-general animal welfare assessment tool for zoos. Applied Animal Behaviour Science 264, 105965.

Accredited zoos and aquariums are required to have a welfare assessment process in place for the animals in their care. However, welfare assessment theoretical frameworks and methodologies vary widely. Previous studies have shown that taxonomic...

Beer, H. N., Karr, L. K., Shrader, T. C. et al. 2023. Allostatic load index effectively measures chronic stress status in zoo-housed giraffes. Journal of Zoological and Botanical Gardens 4(3), 623–636.

For giraffes, few standardized methods exist for quantifying chronic stress. Allostatic load index is quantified from a panel of multi-system stress biomarkers to estimate cumulative stress. Our objective was to determine whether a panel of...

Campbell-Ward, M. 2023. Quality-of-life assessments in zoo animals: Not just for the aged and charismatic. Animals 13(21), 3394

Zoos should aim to provide all of their animals with a good quality of life (QoL) throughout all life stages. In parallel with the evolution of QoL assessment questionnaires and tools in human and domestic...

Littlewood, K. E., Heslop, M. V., Cobb, M. L. 2023. The agency domain and behavioral interactions: Assessing positive animal welfare using the Five Domains Model. Frontiers in Veterinary Science 10.
Pretorius, Y., Eggeling, T., Ganswindt, A. 2023. Identifying potential measures of stress and disturbance during a captive to wild African elephant reintegration. PLOS ONE 18(10), e0291293.

There is increasing evidence of compromised welfare for elephants managed in captivity. Should such facilities eventually close, more elephants will need to be rehabilitated and reintegrated into the wild. The goal of such reintegration would...

Rogers, L. J. 2023. Knowledge of lateralized brain function can contribute to animal welfare. Frontiers in Veterinary Science 10.

The specialized functions of each hemisphere of the vertebrate brain are summarized together with the current evidence of lateralized behavior in farm and companion animals, as shown by the eye or ear used to attend...

Rose, P. 2023. Identifying essential elements of good giraffe welfare—Can we use knowledge of a species’ fundamental needs to develop welfare-focussed husbandry? Journal of Zoological and Botanical Gardens 4(3), 549–566.

Measurement of zoo animal welfare states enables improvement to husbandry and management to be evidence-based and implemented according to species’ needs. Theoretical welfare concepts are often discussed, and whilst it is helpful to ensure wide...

Wang, Y., Wei, W., Yuan, F. et al. 2023. The science underlying giant panda conservation translocations. Animals 13(21), 3332.

The giant panda (Ailuropoda melanoleuca) is the flagship species of animal conservation worldwide, and the number of captive pandas reached 673 in 2021. According to the Fourth National Survey Report on the Giant Panda, there...

Schütz, A. K., Krause, E. T., Fischer, M. et al. 2022. Computer vision for detection of body posture and behavior of red foxes. Animals 12(3), 233.

The behavior of animals is related to their health and welfare status. The latter plays a particular role in animal experiments, where continuous monitoring is essential for animal welfare. In this study, we focus on...

Nguyen, T. T. H., Nguyen, T. M. D. 2022. Non-invasive assessment of physiological stress in captive common palm civets (Paradoxurus hermaphroditus) in Vietnam. Journal of Animal Behaviour and Biometeorology 10(2), 2219.

Common Palm Civet (Paradoxurus hermaphroditus) is a rare mammal appearing in South and Southeast Asia, first described in 1777. Because of the detrimental effects of stress, studying stress responses is important for this wildlife conservation...

Garai, M. E., Roos, T., Eggeling, T. et al. 2022. Developing welfare parameters for African elephants (Loxodonta africana) in fenced reserves in South Africa. PLOS ONE 17(3), e0264931.

South Africa has many fenced reserves harbouring small to medium sized populations of African elephant (Loxodonta africana), most of which have been translocated. Elephants on fenced reserves may be exposed to various management interventions and...

Deacon, F., Daffue, W., Nel, P. 2022. Effective field immobilisation and capture of giraffe (Giraffa camelopardalis). Animals 12(10), 1290.

One of the highest occurrences of mortalities among giraffes (Giraffa camelopardalis) takes place during immobilisations, captures and translocations. Common mistakes, human error, unforeseen risks, the awkward anatomy and the sheer size of the animal are...

Wark, J. D. 2022. Power up: Combining behavior monitoring software with business intelligence tools to enhance proactive animal welfare reporting. Animals 12(13), 1606.

Animal welfare is a dynamic process, and its evaluation must be similarly dynamic. The development of ongoing behavior monitoring programs in zoos and aquariums is a valuable tool for identifying meaningful changes in behavior and...

Hamlaoui, A., Keeling, L., Burman, O. et al. 2022. Investigating attentional scope as a novel indicator of emotional state in animals. Scientific Reports 12(1), 17452.

In humans, contrasting emotional states can lead to a broadening or narrowing of attentional scope. Whether this is also the case in animals has yet to be investigated. If confirmed, measurement of attentional scope has...

Hamlaoui, A., Keeling, L., Burman, O. et al. 2022. Investigating attentional scope as a novel indicator of emotional state in animals. Scientific Reports 12(1), 17452.

In humans, contrasting emotional states can lead to a broadening or narrowing of attentional scope. Whether this is also the case in animals has yet to be investigated. If confirmed, measurement of attentional scope has...

Racciatti, D. S., Feld, A., Rial, L. A. et al. 2022. Ackonc-AWA: A multi-species animal welfare assessment protocol for wild animals under human care to overcome the use of generic welfare checklists. Frontiers in Veterinary Science 9.

Maintaining a high level of animal welfare is essential in zoos, sanctuaries and aquaria for ethical, legislative and functional reasons. Therefore, it is necessary to have welfare assessment protocols that can be incorporated into daily...

Ruge, L., Mancini, C. 2022. An ethics toolkit to support animal-centered research and design. Frontiers in Veterinary Science 9, 891493.

Designers and researchers who work with animals need to employ an array of ethical competencies to guarantee the welfare of animals taking part in animal-centered research. The emerging field of Animal-Computer Interaction (ACI), which deals...

Manning, P., Hauff, L., Padfield, C. et al. 2022. Can stress and anxiety be assessed in African elephants (Loxodonta africana) using self-directed behaviour? Applied Animal Behaviour Science 256, 105746.

Captive African elephants used in the tourism industry face numerous welfare issues which are often stress related and linked to high numbers of tourists or human-elephant interactions. Elephant welfare is commonly assessed by quantifying faecal...

Free, D., Justice, W. S. M., Smith, S. J. et al. 2022. An approach to assessing zoo animal welfare in a rarely studied species, the common cusimanse Crossarchus obscurus. Journal of Zoological and Botanical Gardens 3(3), 420–441.

Objective welfare assessments play a fundamental role in ensuring that positive welfare is achieved and maintained for animals in captivity. The Animal Welfare Assessment Grid (AWAG), a welfare assessment tool, has been validated for use...