Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Plangsangmas, T., Brown, J., Thitaram, C. et al. 2020. Circadian rhythm of salivary immunoglobulin A and associations with cortisol as a stress biomarker in captive Asian elephants (Elephas maximus). Animals 10(1), 157.

Salivary immunoglobulin A (sIgA) has been proposed as a potential indicator of welfare for various species, including Asian elephants, and may be related to adrenal cortisol responses. This study aimed to distinguish circadian rhythm effects...

Webb, J., Crawley, J., Seltmann, M. et al. 2020. Evaluating the reliability of non-specialist observers in the behavioural assessment of semi-captive Asian elephant welfare. Animals 10(1), 167.

Recognising stress is an important component in maintaining the welfare of captive animal populations, and behavioural observation provides a rapid and non-invasive method to do this. Despite substantial testing in zoo elephants, there has been...

Webber, C., Lee, P. 2020. Play in elephants: Wellbeing, welfare or distraction? Animals 10(2), 305.

We explore elephant play behaviour since (a) play has been proposed to represent a potential welfare indicator; and (b) play has been associated with long-term survival in the wild. We categorised play into four types...

Schiffmann, C., Clauss, M., Hoby, S. et al. 2020. Weigh and see—Body mass recordings versus body condition scoring in European zoo elephants (Loxodonta africana and Elephas maximus). Zoo Biology 39(2), 97-108.

Regular body mass (BM) monitoring plays a key role in preventative health care of zoo animals. In some species, including African (Loxodonta africana) and Asian elephants (Elephas maximus), the process of weighing can be challenging...

Turner, P. V., Pang, D. S., Lofgren, J. L. 2019. A review of pain assessment methods in laboratory rodents. Comparative Medicine 69(6), 451–467.

Ensuring that laboratory rodent pain is well managed underpins the ethical acceptability of working with these animals in research. Appropriate treatment of pain in laboratory rodents requires accurate assessments of the presence or absence of...

Stracke, J., Klotz, D., Wohlsein, P. et al. 2020. Scratch the surface: Histopathology of foot-pad dermatitis in turkeys (Meleagris gallopavo). Animal Welfare 29(4), 419-432.

Foot-pad dermatitis (FPD) is an important indicator of animal welfare in turkeys (Meleagris gallopavo). The present study aimed to evaluate the reliability and validity of a commonly used five-point visual score (VC), assessing FPD based...

Chapa, J. M., Maschat, K., Iwersen, M. et al. 2020. Accelerometer systems as tools for health and welfare assessment in cattle and pigs – A review. Behavioural Processes 181, 104262.

Welfare assessment has traditionally been performed by direct observation by humans, providing information at only selected points in time. Recently, this assessment method has been questioned, as ‘Precision Livestock Farming’ technologies may be able to...

Cloutier Barbour, C., Danforth, M. D., Murphy, H. et al. 2020. Monitoring great ape heart health through innovative electrocardiogram technology: Training methodologies and welfare implications. Zoo Biology 39(6), 443-447.

Assessing and treating cardiovascular disease (or heart disease) is a growing concern for institutions housing great apes, as it is a major cause of mortality in all four taxa managed in human care. As part...

Dalmau, A., Moles, X., Pallisera, J. 2020. Animal welfare assessment protocol for does, bucks, and kit rabbits reared for production. Frontiers in Veterinary Science 7, 445.

Rabbits are the third species in terms of number of animals reared for meat production in the world. However, in comparison to other species, very few studies have focused on their welfare. The aim of...

Finch, K., Sach, F., Fitzpatrick, M. et al. 2020. Longitudinal improvements in zoo-housed elephant welfare: A case study at ZSL Whipsnade Zoo. Animals 10(11), 2029.

Over the last two decades, criticisms were raised regarding the welfare experienced by elephants in European and North American zoos. Concerns regarding the welfare of zoo-housed elephants in the UK and Europe were consolidated in...

Miller, L. J., Vicino, G. A., Sheftel, J. et al. 2020. Behavioral diversity as a potential indicator of positive animal welfare. Animals 10(7), 1211.

Modern day zoos and aquariums continuously assess the welfare of their animals and use evidence to make informed management decisions. Historically, many of the indicators of animal welfare used to assess the collection are negative...

Taylor, P. 2020. Remote controlled nociceptive threshold testing systems in large animals. Animals 10(9), 1556.

Nociceptive threshold (NT) testing is widely used for the study of pain and its alleviation. The end point is a normal behavioural response, which may be affected by restraint or unfamiliar surroundings, leading to erroneous...

Miretti, S., Lecchi, C., Ceciliani, F. et al. 2020. MicroRNAs as biomarkers for animal health and welfare in livestock. Frontiers in Veterinary Science 7, 578193.

MicroRNAs (miRNAs) are small and highly conserved non-coding RNA molecules that orchestrate a wide range of biological processes through the post-transcriptional regulation of gene expression. An intriguing aspect in identifying these molecules as biomarkers is...

Mogil, J. S., Pang, D. S. J., Silva Dutra, G. G. et al. 2020. The development and use of facial grimace scales for pain measurement in animals. Neuroscience & Biobehavioral Reviews 116, 480-496.

The measurement of pain in animals is surprisingly complex, and remains a critical issue in veterinary care and biomedical research. Based on the known utility of pain measurement via facial expression in verbal and especially...

Volkmann, N., Kulig, B., Kemper, N. 2019. Using the footfall sound of dairy cows for detecting claw lesions. Animals 9(3), 78.

An important factor for animal welfare in cattle farming is the detection of lameness. The presented study is part of a project aiming to develop a system that is capable of an automated diagnosis of...

McLennan, K., Mahmoud, M. 2019. Development of an automated pain facial expression detection system for sheep (Ovis aries). Animals 9(4), 196.

The use of technology to optimize the production and management of each individual animal is becoming key to good farming. There is a need for the real-time systematic detection and control of disease in animals...

Sharma, A., Kennedy, U., Phillips, C. 2019. A novel method of assessing floor friction in cowsheds and its association with cow health. Animals 9(4), 120.

Measurement of friction of cowshed floors to determine slipperiness potential is important for cow comfort. Existing methods require elaborate equipment and procedures. A quick method for assessment of friction characteristics is proposed. Friction was measured...

Vindevoghel, T. V., Fleming, P. A., Hyndman, T. H. et al. 2019. Qualitative Behavioural Assessment of Bos indicus cattle after surgical castration. Applied Animal Behaviour Science 211, 95-102.

There are various methods to perform castration of cattle, but surgical castration is the most common. Although it is well documented that surgical procedures inflict pain, analgesic use is usually omitted for surgical castration of...

Howell, C. P., Cheyne, S. M. 2019. Complexities of using wild versus captive activity budget comparisons for assessing captive primate welfare. Journal of Applied Animal Welfare Science 22(1), 78-96.

Activity budget comparisons between groups or individuals in the wild and those in captivity are commonly used to determine the range of wild-type behaviors that nonhuman animals in captivity perform. These comparisons are conducted with...

Barry, J., Kennedy, E., Sayers, R. et al. 2019. Development of a welfare assessment protocol for dairy calves from birth through to weaning. Animal Welfare 28(3), 331-344.

The aim of this study was to develop a welfare assessment protocol using different indicators, for pre-weaned dairy calves, that is feasible and time efficient. To this end, the protocol had to combine animal-based indicators...

Fogarty, E. S., Swain, D. L., Cronin, G. M. et al. 2019. A systematic review of the potential uses of on-animal sensors to monitor the welfare of sheep evaluated using the Five Domains Model as a framework. Animal Welfare 28(4), 407-420.

This systematic review explores the use of on-animal sensors in sheep and their potential application in objective welfare monitoring. The key questions posed were: To what extent can current scientific knowledge inform a sensor-based approach...

Sharma, A., Umapathy, G., Kumar, V. et al. 2019. Hair cortisol in sheltered cows and its association with other welfare indicators. Animals 9(5), 248.

India, the country with the largest population of dairy cows in the world, has a policy of retiring abandoned and non-lactating cows in shelters, but the level of provision for their welfare in these shelters...

Mullins, I. L., Truman, C. M., Campler, M. et al. 2019. Validation of a commercial automated body condition scoring system on a commercial dairy farm. Animals 9(6), 287-287.

Body condition scoring (BCS) is the management practice of assessing body reserves of individual animals by visual or tactile estimation of subcutaneous fat and muscle. Both high and low BCS can negatively impact milk production...

Grant, E. P., Wickham, S. L., Anderson, F. et al. 2019. Remote identification of sheep with flystrike using behavioural observations. Animals 9(6), 368.

Flystrike is a major problem affecting sheep in Australia. Identification of 'flystruck' individuals is crucial for treatment; but requires labour-intensive physical examination. As the industry moves toward more low-input systems; there is a need for...

Sharma, A., Phillips, C. J. C. Avoidance distance in sheltered cows and its association with other welfare parameters. Animals 9(7), 396.

The human–animal relationship is an important welfare parameter in animal welfare assessment in cows, and the avoidance distance of cows to a stranger at the feed bunk is measured to assess this relationship. The assessment...