Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Lambert, H., Cornish, A., Waley, D. 2024. The value of regulating stocking densities in aquaculture must not be dismissed: A reply to Saraiva et al. 2022. Frontiers in Veterinary Science 10.

We would like to rebut the argument made by Saraiva et al. (1) in their paper “Finding the “golden stocking density”: a balance between fish welfare and farmers' perspectives,” that stocking densities should not be...

Robinson, L. M., Weiss, A. (Eds.) 2023. Nonhuman Primate Welfare: From History, Science, and Ethics to Practice. Springer, Cham, Switzerland. 671 p.

This volume reviews the broad topic of welfare in nonhuman primates under human care. Chapters detail the history of primates in captivity, ethical and legal issues surrounding the use of nonhuman primates as entertainment or...

Diao, W., Jia, R., Hou, Y. et al. 2023. Effects of stocking density on the growth performance, physiological parameters, antioxidant status and lipid metabolism of Pelteobagrus fulvidraco in the integrated rice-fish farming system. Animals 13(11), 1721.

Pelteobagrus fulvidraco is a freshwater fish commonly raised in rice fields, yet the optimal stocking density for this species remains unknown. Therefore, this study aimed to investigate the appropriate stocking density of P. fulvidraco in...

Hube, D., Bill, J., Knop, E. S. et al. 2023. Physical injuries and hair corticosterone concentration in rabbit kits from single- and group-housed does kept on a commercial farm. Animals 13(2), 196.

In intense breeding programs, rabbits are exposed to numerous stress factors which could affect their welfare and health. It has been suggested that group housing is more comfortable for does and similar to the living...

Novák, J., Frynta, D., Nováková, D. et al. 2023. Social deprivation in maternal mouthbrooders Tropheus sp. “Caramba” (Teleostei: Cichlidae) decreases the success rate of reproduction and survival rate of fish fry. Scientific Reports 13(1), 8284.

Early offspring separation from mothers causes social deprivation. Mouthbrooding, when eggs and fry are incubated in the buccal cavity of the parent, is one of the reproductive strategies in fish. The mother is the incubating...

Rucinque, D. S., van de Vis, H., Reimert, H. et al. 2023. Pre-slaughter stunning of farmed Atlantic halibut in CO2-saturated seawater: Assessment of unconsciousness by electroencephalography (EEG). Animals 13(12), 1993.

As fish welfare becomes a growing concern, it is important to ensure humane treatment during slaughter. This study aimed to assess the onset of unconsciousness in Atlantic halibut immersed in CO2-saturated seawater through electroencephalography (EEG)...

Baßmann, B., Hahn, L., Rebl, A. et al. 2023. Effects of stocking density, size, and external stress on growth and welfare of African catfish (Clarias gariepinus Burchell, 1822) in a commercial RAS. Fishes 8(2), 74.

The effects of semi-intensive (100 kg m−3), intensive (200 kg m−3), and super-intensive (400 kg m−3) stocking densities on the growth and welfare of African catfish (Clarias gariepinus) were investigated under commercial production conditions. Plasma...

Brando, S., Norman, M. 2023. Handling and training of wild animals: Evidence and ethics-based approaches and best practices in the modern zoo. Animals 13(14), 2247.

There is an ethical responsibility to provide all animals living in human care with optimal and positive well-being. As animals living in zoos and aquariums frequently interact with their human caregivers as part of their...

Clemente, G. A., Tolini, C., Boscarino, A. et al. 2023. Farmed fish welfare during slaughter in Italy: Survey on stunning and killing methods and indicators of unconsciousness. Frontiers in Veterinary Science 10.

Information on slaughter procedures for farmed fish in aquaculture is limited, both in Europe and in Italy, due to a general lack of field data. The aim of this study was to gather information on...

Perret-Thiry, C., Raulic, J., Vergneau-Grosset, C. 2022. Evaluation of prolonged immersion in tricaine methanesulfonate for juvenile goldfish (Carassius auratus) euthanasia. Journal of the American Veterinary Medical Association 260(8), 911-915.

OBJECTIVE: Doses of buffered tricaine methanesulfonate (MS-222) up to 1000 mg/L for 15 minutes are reported inefficient to produce euthanasia in goldfish. The goal of this study was to determine if goldfish can be euthanized...

Williams, M. L., Torrini, L. A., Nolan, E. J. et al. 2022. Using classical and operant conditioning to train a shifting behavior in juvenile false water cobras (Hydrodynastes gigas). Animals 12(10), 1229.

All animals have the capacity to learn through operant conditioning and other types of learning, and as a result, zoos and other animal care facilities have shifted towards the use of positive reinforcement training to...

Knaebe, B., Weiss, C. C., Zimmermann, J. et al. 2022. The promise of behavioral tracking systems for advancing primate animal welfare. Animals 12(13), 1648.

Recent years have witnessed major advances in the ability of computerized systems to track the positions of animals as they move through large and unconstrained environments. These systems have so far been a great boon...

Spitzer, H. B., Meagher, R. K., Proudfoot, K. L. 2022. The impact of providing hiding spaces to farmed animals: A scoping review. PLOS ONE 17(11), e0277665.

Many wild animals perform hiding behaviours for a variety of reasons, such as evading predators or other conspecifics. Unlike their wild counterparts, farmed animals often live in relatively barren environments without the opportunity to hide...

Saraiva, J. L., Rachinas-Lopes, P., Arechavala-Lopez, P. 2022. Finding the “golden stocking density”: A balance between fish welfare and farmers’ perspectives. Frontiers in Veterinary Science 9, 930221.

The effects of stocking density on fish welfare are complex and involve many interacting parameters. This complex relationship between fish welfare, stocking density and influencing factors make it challenging to define a specific optimal (“golden”)...

Bilkó, Á., Petróczi, I., Bárdos, B. et al. 2022. Composition of the wild rabbit nest and its implication for domestic rabbit breeding. Applied Sciences 12(4), 1915.

Wild European rabbits (Oryctolagus cuniculus) give birth in an underground nursery burrow where the kits are hermetically closed into the nest chamber for several weeks except for the three minutes of daily nursing. Given this...

Hepps Keeney, C., Harrison, T. M. 2022. Euthanasia complications in non-domestic species. Journal of Zoological and Botanical Gardens 3(4), 616–623.

There are very few studies describing euthanasia complications in non-domestic species. The goal of this study was to survey veterinarians to determine what complications may commonly occur during the euthanasia of non-domestic species. An online...

Sørensen, D., Cloutier, S., Gaskill, B. (Eds.). 2021. Animal-centric Care and Management - Enhancing Refinement in Biomedical Research. CRC Press, Boca Raton, FL.

The concept of the 3Rs (Refinement, Reduction and Replacement) has been used as a framework for improving the welfare of laboratory animals for the last half century. By establishing an animal-centric view on housing and...

Melfi, V. A., Dorey, N. R., Ward, S. (Eds.) 2020. Zoo Animal Learning and Training. John Wiley & Sons: Hoboken, NJ, 384 pp.

Comprehensively explains animal learning theories and current best practices in animal training within zoos. This accessible, up-to-date book on animal training in a zoo/aquaria context provides a unified approach to zoo animal learning, bringing together...

Składanowska-Baryza, J., Ludwiczak, A., Pruszyńska-Oszmałek, E. et al. 2020. Effect of two different stunning methods on the quality traits of rabbit meat. Animals 10(4), 700.

The aim of the study was to assess the effect of two different stunning methods on the level of blood stress indicators (cortisol, insulin, glucose) and rabbit meat quality. The experiment was conducted on crossbreds...

Reinhardt, V. (ed.) 2020. It’s Okay to Cry - Discussions by the Laboratory Animal Refinement & Enrichment Forum [LAREF], Volume V. Animal Welfare Institute, Washington, DC.

This is the 5th volume of selected discussions that took place on the electronic Laboratory Animal Refinement & Enrichment Forum between February 2016 and December 2019. The forum was created in October 2002; it allows...

Thoré, E. S. J., Brendonck, L., Pinceel, T. 2020. Conspecific density and environmental complexity impact behaviour of turquoise killifish (Nothobranchius furzeri). Fish Biology 97(5), 1448–1461.

Fish models are essential for research in many biological and medical disciplines. With a typical lifespan of only 6 months, the turquoise killifish (Nothobranchius furzeri) was recently established as a time- and cost-efficient model to...

Munari, C., Ponzio, P., Macchi, E. et al. 2020. A multifactorial evaluation of different reproductive rhythms and housing systems for improving welfare in rabbit does. Applied Animal Behaviour Science 230, 105047.

The most widespread reproductive rhythm practiced in rabbit farming is based on artificial insemination (AI) performed at around 11 days pospartum. This approach results in high production rates, but requires high yearly replacement of animals...

Natusch, D. J. D., Aust, P. W., Khadiejah, S. et al. 2020. Behavioral and corticosterone responses to carbon dioxide exposure in reptiles. PLOS ONE 15(10), e0240176.

The use of carbon dioxide (CO2) exposure as a means of animal euthanasia has received considerable attention in mammals and birds but remains virtually untested in reptiles. We measured the behavioral responses of four squamate...

Abayarathna, T., Webb, J. K. 2020. Effects of incubation temperatures on learning abilities of hatchling velvet geckos. Animal Cognition 23(4), 613–620.

Stressful environments in utero can have a profound influence on cognitive functions and learning ability. In lizards, thermal environments experienced by embryos can shape a range of traits, including sex, body size, and locomotor performance...

Butler, J. L., Kennerley, S. W. 2019. Mymou: A low-cost, wireless touchscreen system for automated training of nonhuman primates. Behaviour Research Methods 51, 2559–2572.

Training nonhuman primates (NHPs) to perform cognitive tasks is essential for many neuroscientific investigations, yet laboratory training is a time-consuming process with inherent limitations. Habituating NHPs to the laboratory staff and experimental equipment can take...