Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Stachowicz, J., Gygax, L., Hillmann, E. et al. 2018. Dairy goats use outdoor runs of high quality more regardless of the quality of indoor housing. Applied Animal Behaviour Science 208, 22-30.

For dairy goats in loose housing, access to an outdoor run has potential welfare benefits as it provides additional space, enables spatial separation and may offer items representing behavioural enrichment for the goats (e.g. brush...

Campler, M. R., Jensen, M. B., Munksgaard, L. 2018. The effect of deep straw versus cubicle housing on behaviour during the dry period in Holstein cows. Applied Animal Behaviour Science 209, 1-7.

The present observational study assessed the effect of deep straw bedding compared to cubicles during the dry period on lying-, feeding- and agonistic behaviour in Holstein cows. A total of 74 primi- (heifers) and multiparous...

Edwards, G. L., Michael, J. A., Parks., A. 2018. Agricultural animals as biomedical models: Occupational health and safety considerations. ILAR Journal 59(2), 161-167.

The use of agricultural animals in biomedical research is increasing. Their overall size and metabolic rate, organ size, longer gestation period, and other physiological similarities make them good candidates for animal models of human disease...

Witaifi, A. A., Ali, A. B. A., Siegford, J. M. 2018. Stall and feed bunk stocking rates impact cows' diurnal behavior and activity in automatic milking system farms. Journal of Veterinary Behavior 24, 48-55.

High stall stocking rates have been shown to alter behavior of cows in parlor-milked systems; however, no studies have examined stocking rates for cows milked with automatic milking systems (AMSs). Therefore, we examined the influence...

Winther Christensen, J. Olczak, K.,, Palme, R. et al. 2018. The effect of shelter design on shelter use by Icelandic horses in the winter period. Journal of Veterinary Behavior 27, 47-54.

Little is known about the effect of shelter design on sheltering behavior in horses. This study investigates shelter use by Icelandic horses kept outdoors 24 hours a day during the winter in Denmark and whether...

Rodrigues, M. V., de Castro, S. O., de Albuquerque, C. Z. 2017. The gingival vein as a minimally traumatic site for multiple blood sampling in guinea pigs and hamsters. PLOS ONE 12(5), e0177967.

Laboratory animals are still necessary in scientific investigation and vaccine testing, but while novel methodological approaches are not available for their replacement, the search for new, humane, easy, and painless methods is necessary to diminish...

Sommerville, R., Ruiz, R., Averós, X. 2017. A meta-analysis on the effects of the housing environment on the behaviour, mortality, and performance of growing rabbits. Animal Welfare 26(2), 223-238.

Although the number of rabbits (Oryctolagus cuniculus) produced in Europe is important, they are under-represented in welfare research. Studies on the effects of housing conditions have focused on performance and mortality. We conducted a meta-analysis...

Wittek, T., Salaberger, T., Palme, R. et al. 2017. Clinical parameters and adrenocortical activity to assess stress responses of alpacas using different methods of restraint either alone or with shearing. Veterinary Record 180(23), 568.

Shearing of alpacas is stressful and is undertaken by restraint in the standing position, cast on the floor or on a tilt table. The objectives of the study were to evaluate and compare the stress...

Rice, C., Eberhart, N., Krawczel, P. 2017. Prepartum lying behavior of Holstein dairy cows housed on pasture through parturition. Animals 7(4), 32.

Utilizing pasture-based systems may increase cow comfort during late gestation and calving as it lacks the constraints of confinement housing. The objective of this study was to quantify lying behavior and activity of Holstein dairy...

Nordquist, R., van der Staay, F., van Eerdenburg, F. et al. 2017. Mutilating procedures, management practices, and housing conditions that may affect the welfare of farm animals: Implications for welfare research. Animals 7(2), 12.

A number of mutilating procedures, such as dehorning in cattle and goats and beak trimming in laying hens, are common in farm animal husbandry systems in an attempt to prevent or solve problems, such as...

Rapp-Santos, K. J., Altamura, L. A., Norris, S. L. et al. 2017. Comparison of saliva collection methods for the determination of salivary cortisol levels in rhesus macaques (Macaca mulatta), cynomolgus macaques (Macaca fascicularis), and African green monkeys (Chlorocebus aethiops). JAALAS 56(2), 181-189.

The ability to quickly and accurately determine cortisol as a biomarker for stress is a valuable tool in assessing the wellbeing of NHP. In this study, 2 methods of collecting saliva (a commercial collection device...

Hawkins, P., McNeilly, A., Watson, J. et al. 2017. Report of the 2016 RSPCA/UFAW Rodent and Rabbit Welfare Group meeting. Animal Technology and Welfare 16(2), 77-86.

The RSPCA/UFAW Rodent (and now Rabbit) Welfare Group held a one-day meeting on 1 November 2016 at the University of Edinburgh and was attended by 70 delegates. Presentation topics included refinements in blood sampling rodents...

Holmes, J., Waters, D., Maisonave, I. et al. 2017. Social interaction for non-sibling pregnant New Zealand white rabbits on reproductive toxicology. Animal Technology and Welfare 16(2), 139-141.

Rabbits are gregarious animals that live in social groups in the wild so individually housing our animals, while meeting the present scientific objectives, restricts their natural social behaviour. How to meet the social needs of...

Zomeño, C., Birolo, M., Zuffellato, A. et al. 2017. Aggressiveness in group-housed rabbit does: Influence of group size and pen characteristics. Applied Animal Behaviour Science 194, 79-85.

The aim of this work was to study how the group size and the number of doorways in a pen may influence the aggressive interactions throughout the reproductive cycle among does kept in a part-time...

Sutherland, M. A., Lowe, G. L., Watson, T. J. et al. 2017. Dairy goats prefer to use different flooring types to perform different behaviours. Applied Animal Behaviour Science 197, 24-31.

Flooring is an important component of indoor housing systems for livestock as it can impact animal hygiene and welfare. Therefore, the aim of this study was to evaluate the lying and elimination preferences of goats...

Górecka-Bruzda, A., Jaworski, Z., Suwała, M. et al. 2017. Aversiveness of husbandry procedures for pre-weaned foals: A comparison using behavioural and physiological indices. Applied Animal Behaviour Science 191, 31-38.

Husbandry procedures are necessary for different purposes in horse breeding. The aim of the present study was to assess the aversiveness and effects on the horse-human relationship of a range of common husbandry procedures, in...

Junkkari, R., Simojoki, H., Heiskanen, M.-L. et al. 2017. A comparison of unheated loose housing with stables on the respiratory health of weaned-foals in cold winter conditions: an observational field-study. Acta Veterinaria Scandinavica 59(1), 73.

Newly weaned horses in Finland are often moved to unheated loose housing systems in which the weanlings have free access to a paddock and a shelter. This practice is considered to be good for the...

Li, S.-R., Hao, X., Bi, J.-H. et al. 2017. Why do female desert lizards construct burrows to lay eggs? Behaviour 154(9/10), 1051–1068.

Many oviparous animals construct well-designed nests to provide relatively favourable conditions for their eggs and hatchlings, but the direct evidence that nest structure can determine their reproductive success is insufficient. In the present study, we...

McMillan, J. L., Bloomsmith, M. A., Prescott, M. J. 2017. An international survey of approaches to chair restraint of nonhuman primates. Comparative Medicine 67(5), 442–451.

Specifically designed restraint chairs are the preferred method of restraint for research studies that require NHP to sit in place for sustained periods of time. In light of increasing emphasis on refinement of restraint to...

Ali, A. B. A., Gutwein, K. L., Heleski, C. R. 2017. Assessing the influence of upper lip twitching in naive horses during an aversive husbandry procedure (ear clipping). Journal of Veterinary Behavior 21, 20-25.

When engaging in procedures that horses may find aversive, restraint methods are often used to help ensure safety of both horse and handler. Twitching is a common restraint method, but its use is sometimes considered...

Knapek, K. J., Adams, M. K., Ayers, J. D. 2017. What’s in our chamber of secrets? Python housing in a laboratory setting. Laboratory Animal Science Professional 5(4) (December), 16-19.

At Colorado State University we have an investigator who requested care for 2 different species of pythons, the green tree python (Morelia viridis) and the ball python (Python reguis), to study the pathology of an...

Cavallaro, J., Stevens Jr., R. W., Wilson, B. et al. 2017. Social housing pig tail macaques in repurposed chimpanzee enclosures. Laboratory Animal Science Professional 5(2) (June), 60-61.

As chimpanzees are retired from research, enclosures such as the Primadomes™ become available for repurposing for other monkey species. However, modifications are necessary to meet specific monkey species needs, and considerations for animal handling and...

Smedley, J., Macalister, R., Wangari, S. et al. 2016. Laparoscopic technique for serial collection of para-colonic, left colic, and inferior mesenteric lymph nodes in macaques. PLOS ONE 11(6), e0157535.

Unlike peripheral lymph nodes (PLN), the mesenteric lymph nodes (MLN) draining the gastrointestinal (GI) tract are exposed to microbes and microbial products from the intestines and as such, are immunologically distinct. GI draining (MLN) have...

Byrd, C. P., Winnicker, C., Gaskill, B. N. 2016. Instituting dark-colored cover to improve central space use within guinea pig enclosure. Journal of Applied Animal Welfare Science 19(4), 408-413.

Domestic guinea pigs (Cavia aperea f. porcellus) in laboratories have been shown to actively avoid the centers of their cages. This experiment tested a novel, dark-colored “shader” placed over the central portion of a cage...

Cornale, P., Macchi, E., Renna, M. et al. 2016. Effect of cage type on fecal corticosterone concentration in buck rabbits during the reproductive cycle. Journal of Applied Animal Welfare Science 19(1), 90-96.

Fecal corticosterone concentration (FCC) was measured in 14 buck rabbits individually housed in standard-dimension cages (SC) or in bigger cages (BC; with a volume more than double that of SC and equipped with a plastic...