Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Yatkin, E., Kulmala, N., Saukkonen, A. et al. 2021. A real-time health notification system aimed at enhancing the interaction between animal care staff and researchers promotes animal welfare. Laboratory Animals 55(3), 281-289.

Regardless of the microbiological status of an animal facility, research animals may experience health problems, leading to pain, suffering and distress. Simple and efficient tools are needed to collect data systematically, allowing researchers to react...

FELASA Working Group on Farm Animals: Berset, C. M., Caristo, M. E., Ferrara, F. et al. 2021. Federation of European Laboratory Animal Science Associations recommendations of best practices for the health management of ruminants and pigs used for scientific and educational purposes. Laboratory Animals 55(2), 117-128.

Most ruminants and pigs used for scientific and educational aims are bred not for these purposes but in a farm environment. Given the wide range of diseases that these species might have, ensuring that the...

Dalla Costa, E., Dai, F., Lecchi, C. et al. 2021. Towards an improved pain assessment in castrated horses using facial expressions (HGS) and circulating miRNAs. Veterinary Record 188(9), e82.

Background: Pain in horses is an emergent welfare concern, and its assessment represents a challenge for equine clinicians. This study aimed at improving pain assessment in horses through a convergent validation of existing tools: we...

Hall, K., Bryant, J., Staley, M. et al. 2021. Behavioural diversity as a potential welfare indicator for professionally managed chimpanzees (Pan troglodytes): Exploring variations in calculating diversity using species-specific behaviours. Animal Welfare 30(4), 381-392.

Behavioural diversity may serve as a positive indicator of animal welfare that can be applied in long-term monitoring schemes in managed settings (eg zoos, laboratories, farms). Behavioural diversity is often higher when animals live in...

Hausberger, M., Lesimple, C., Henry, S. 2021. Detecting welfare in a non-verbal species: Social/cultural biases and difficulties in horse welfare assessment. Animals 11(8), 2249.

Horses were domesticated for more than 5000 years and have been one of the most emblematic species living alongside humans. This long-shared history would suggest that horses are well known and well understood, but scientific...

Silva, S. R., Araujo, J. P., Guedes, C. et al. 2021. Precision technologies to address dairy cattle welfare: Focus on lameness, mastitis and body condition. Animals 11(8), 2253.

Specific animal-based indicators that can be used to predict animal welfare have been the core of protocols for assessing the welfare of farm animals, such as those produced by the Welfare Quality project. At the...

Pomerantz, O., Capitanio, J. P. 2021. Temperament predicts the quality of social interactions in captive female rhesus macaques (Macaca mulatta). Animals 11(8), 2452.

Previous reports suggest that female macaques with greater similarity in emotionality and nervous temperament, as evaluated in a well-established BioBehavioral Assessment (BBA) at the California National Primate Research Center, were more likely to form successful...

Travain, T., Valsecchi, P. 2021. Infrared thermography in the study of animals’ emotional responses: A critical review. Animals 11(9), 2510.

Whether animals have emotions was historically a long-lasting question but, today, nobody disputes that they do. However, how to assess them and how to guarantee animals their welfare have become important research topics in the...

Minnig, A., Zufferey, R., Thomann, B. et al. 2021. Animal-based indicators for on-farm welfare assessment in goats. Animals 11(11), 3138.

This review describes the current state of knowledge relating to scientific literature on welfare indicators for goats. Our aim was to provide an overview of animal-based indicators for on-farm welfare assessments. We performed a literature...

Diana, A., Salas, M., Pereboom, Z. et al. 2021. A systematic review of the use of technology to monitor welfare in zoo animals: Is there space for improvement? Animals 11(11), 3048.

A top priority of modern zoos is to ensure good animal welfare (AW), thus, efforts towards improving AW monitoring are increasing. Welfare assessments are performed through more traditional approaches by employing direct observations and time-consuming...

Thomas, A. D., Orsel, K., Cortés, J. A. et al. 2021. Impact of digital dermatitis on feedlot cattle behaviour. Applied Animal Behaviour Science 244, 105468.

Digital dermatitis (DD) is an infectious disease affecting the bovine digital skin which can cause lameness and significantly affect animal welfare and economics. Digital dermatitis has emerged in feedlots and early identification of DD lesions...

Sun, D., Webb, L., van der Tol, P. P. J. et al. 2021. A systematic review of automatic health monitoring in calves: Glimpsing the future from current practice. Frontiers in Veterinary Science 8, 761468.

Infectious diseases, particularly bovine respiratory disease (BRD) and neonatal calf diarrhea (NCD), are prevalent in calves. Efficient health-monitoring tools to identify such diseases on time are lacking. Common practice (i.e., health checks) often identifies sick...

Neethirajan, S. 2021. The use of artificial intelligence in assessing affective states in livestock. Frontiers in Veterinary Science 8, 715261.

In order to promote the welfare of farm animals, there is a need to be able to recognize, register and monitor their affective states. Numerous studies show that just like humans, non-human animals are able...

Bowling, P. A., Bencivenga, M. A., Leyva, M. E. et al. 2021. Effects of a heated anesthesia breathing circuit on body temperature in anesthetized rhesus macaques (Macaca mulatta). JAALAS 60(6), 675-680.

This study evaluated the effects of using a heated anesthesia breathing circuit in addition to forced-air warming on body temperature in anesthetized rhesus macaques as compared with forced-air warming alone. Hypothermia is a common perianesthetic...

Lencioni, G. C., de Sousa, R. V., de Souza Sardinha, E. J. et al. 2021. Pain assessment in horses using automatic facial expression recognition through deep learning-based modeling. PLOS ONE 16(10), e0258672.

The aim of this study was to develop and evaluate a machine vision algorithm to assess the pain level in horses, using an automatic computational classifier based on the Horse Grimace Scale (HGS) and trained...

Ross, S. R., Lake, B. R., Fultz, A. et al. 2021. An evaluation of thermal imaging as a welfare monitoring tool for captive chimpanzees. Primates 62(6), 919-927.

Among the growing list of novel tools with which to assess animal welfare is the use of thermal (infrared) imaging. The technology has already been utilized to identify emotional arousal in several nonhuman primate species...

Edes, A. N., Brand, C. M. 2021. Age, sex, and inflammatory markers predict chronic conditions, cardiac disease, and mortality among captive western lowland gorillas (Gorilla gorilla gorilla). Primates 62(6), 931-943.

In humans, inflammatory markers predict health risks. As great apes experience many similar conditions, measuring inflammation may provide valuable health information. We examined four serum inflammatory markers in zoo-housed gorillas (n = 48): albumin, CRP, IL-6, and...

Guo, Y., He, D., Chai, L. 2020. A machine vision-based method for monitoring scene-interactive behaviors of dairy calf. Animals 10(2), 190.

Requirements for animal and dairy products are increasing gradually in emerging economic bodies. However, it is critical and challenging to maintain the health and welfare of the increasing population of dairy cattle, especially the dairy...

Lowe, G., McCane, B., Sutherland, M. et al. 2020. Automated collection and analysis of infrared thermograms for measuring eye and cheek temperatures in calves. Animals 10(2), 292.

As the reliance upon automated systems in the livestock industry increases, technologies need to be developed which can be incorporated into these systems to monitor animal health and welfare. Infrared thermography (IRT) is one such...

Neave, H. W., Costa, J. H. C., Weary, D. M. 2020. Long-term consistency of personality traits of cattle. Royal Society Open Science 7(2), 7191849.

Personality is often defined as the behaviour of individual animals that is consistent across contexts and over time. Personality traits may become unstable during stages of ontogeny from infancy to adulthood, especially during major periods...

Hyde, R. M., Down, P. M., Bradley, A. J. et al. 2020. Automated prediction of mastitis infection patterns in dairy herds using machine learning. Scientific Reports 10(1), 4289.

Mastitis in dairy cattle is extremely costly both in economic and welfare terms and is one of the most significant drivers of antimicrobial usage in dairy cattle. A critical step in the prevention of mastitis...

Baciadonna, L., Briefer, E. F., McElligott, A. G. 2020. Investigation of reward quality-related behaviour as a tool to assess emotions. Applied Animal Behaviour Science 225, 104968.

Animals are likely to appraise events as positive or negative based on their subjective perception, current state and past experiences. We tested the effects of anticipating positive (food anticipation), negative (inaccessible food) and neutral (clicker...

Marcantonio Coneglian, M., Duarte Borges, T., Henrique Weber, S. et al. 2020. Use of the horse grimace scale to identify and quantify pain due to dental disorders in horses. Applied Animal Behaviour Science 225, 104970.

Dental disorders can cause discomfort and chronic pain, affecting the athletic performance and welfare of the horses. However, dental disorders may not be manifested with recognizable clinical signs and may, therefore, lead to late diagnosis...

Padalino, B., Raidal, S. 2020. Effects of transport conditions on behavioural and physiological responses of horses. Animals 10(1), 160.

The regulations for minimal space and direction of travel for land transport in horses vary worldwide and there is currently no definitive guidance to promote equine health and welfare. This study evaluated the effects of...

Torcivia, C., McDonnell, S. 2020. In-person caretaker visits disrupt ongoing discomfort behavior in hospitalized equine orthopedic surgical patients. Animals 10(2), 210.

Horses have evolved to show little indication of discomfort or disability when in the presence of potential predators, including humans. This natural characteristic complicates the recognition of pain in equine patients. It has been our...