Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Neal Webb, S., Schapiro, S. 2023. Locomotion as a measure of well-being in captive chimpanzees (Pan troglodytes). Animals 13(5), 803.

Locomotion in non-human primates, including walking, climbing, and brachiating among other types of movement (but not pacing), is a species-typical behavior that varies with age, social housing conditions, and environmental factors (e.g., season, food availability...

Hammer, R., Stribos, M. S., Boehm, P. M. et al. 2023. A novel methodological approach for group classification during fission of a semi-free-ranging group of Japanese macaques (Macaca fuscata). American Journal of Primatology 85(2), e23463.

The self-initiated split of a social group, known as fission, is a challenge faced by many group-living animals. The study of group fission and the social restructuring process in real time provides insights into the...

Englund, M. D., Cronin, K. A. 2023. Choice, control, and animal welfare: Definitions and essential inquiries to advance animal welfare science. Frontiers in Veterinary Science 10.

The ways in which humans can support good welfare for animals in their care is an ongoing subject of debate: some place emphasis on the animals’ physical health; others, on animals’ ability to live “natural...

Cordoni, G., Ciarcelluti, G., Pasqualotto, A. et al. 2023. Is it for real? Structural differences between play and real fighting in adult chimpanzees (Pan troglodytes). American Journal of Primatology 85(9), e23537.

In primates, as well as in other mammals, play fighting (PF) is a complex form of playful activity that is structurally similar to real fighting (RF) and may also be used in a competitive way...

Rosati, A. G., Sabbi, K. H., Bryer, M. A. H. et al. 2023. Observational approaches to chimpanzee behavior in an African sanctuary: Implications for research, welfare, and capacity-building. American Journal of Primatology 85(9), e23534.

Research in African ape sanctuaries has emerged as an important context for our understanding of comparative cognition and behavior. While much of this work has focused on experimental studies of cognition, these animals semi-free-range in...

Molinaro, H. G., Anderson, G. S., Gruny, L. et al. 2022. Use of blood lactate in assessment of manual capture techniques of zoo-housed crocodilians. Animals 12(3), 397.

Species-specific welfare indicators are important in promoting positive welfare for zoo animals. Reptiles are a notoriously understudied group in regards to behavior, welfare needs, and husbandry requirements. Using opportunistically obtained samples, we evaluated how blood...

Leeds, A., Riley, A., Terry, M. et al. 2022. Out of sight, out of mind or just something in the way? Visual barriers do not reduce intraspecific agonism in an all-male group of Nile crocodiles (Crocodylus niloticus). Animals 12(3), 269.

Here, we evaluated if visual barriers could reduce intraspecific agonism in an all-male group of Nile crocodiles (Crocodylus niloticus) living in a zoo. Crocodiles were monitored for nearly 100 h, and four “hotspots” of aggression...

Tomeczko, S. 2022. Interpreting macaque facial expressions and body behavior in preparation for social housing. Laboratory Animal Science Professional 10(1) (January/February), 62-63.

This article will help those who are new to working with non-human primates. Interpreting macaque facial expressions and body behavior is important for beginning the process of pair housing two animals.

Orient, E., Guillén‐Salazar, F. 2022. Evaluation of social compatibility in an all‐male group of chimpanzees (Pan troglodytes) by means of social network analysis. Zoo Biology 41(1), 84-93.

The study here presented provides preliminary data regarding social compatibility of an all-male group of five chimpanzees (Pan troglodytes), assessed by means of a social network analysis (SNA). The study was conducted at the Fundació...

Fultz, A., Yanagi, A., Breaux, S. et al. 2022. Aggressive, submissive, and affiliative behavior in sanctuary chimpanzees (Pan Troglodytes) during social integration. Animals 12(18), 2421.

Chimp Haven is a sanctuary for chimpanzees being retired from biomedical research and from facilities that can no longer care for them. Chimpanzees often live in smaller groups in captive settings; however, Chimp Haven integrates...

Escribano, D., Doldán-Martelli, V., Cronin, K. A. et al. 2022. Chimpanzees organize their social relationships like humans. Scientific Reports 12(1), 16641.

Human relationships are structured in a set of layers, ordered from higher (intimate relationships) to lower (acquaintances) emotional and cognitive intensity. This structure arises from the limits of our cognitive capacity and the different amounts...

Albanese, V., Berardi, R., Llorente, M. et al. 2022. Mechanisms of expression of object play: A comparative study of stone handling in two captive groups of long-tailed macaques (Macaca fascicularis fascicularis). Behavioural Processes 203, 104774.

Stone handling (SH) is a form of solitary object play that is socially learned and culturally maintained. We studied two captive groups (Modena, N = 20; Padova, N = 20) of common long-tailed macaques housed...

Walsh, Z. C., Olson, H., Clendening, M. et al. 2022. Social behavior deficiencies in captive American alligators (Alligator mississippiensis). Journal of Zoological and Botanical Gardens 3(1), 131–146.

Understanding how the behavior of captive American alligator (Alligator mississippiensis) congregations compares to wild congregations is essential to assessing the welfare of alligators in captivity. Wild alligator congregations perform complex social behaviors, but it is...

Funkhouser, J. A., Mayhew, J. A., Mulcahy, J. et al. 2021. Human caregivers are integrated social partners for captive chimpanzees. Primates 62(2), 297–309.

In a captive environment, it is challenging to ensure the highest level of social and psychological well-being for species with naturally complex social organizations and structures. There is a growing need to meet the social...

Coleman, K., Shapiro, S. J. (Eds.). 2021. Behavioral Biology of Laboratory Animals (1st ed). CRC Press, Boca Raton, FL.

This 30-chapter volume informs students and professionals about the behavioral biology of animals commonly housed in laboratory and other captive settings. Each species evolved under specific environmental conditions, resulting in unique behavioral patterns, many of...

Cowl, V. B., Walker, S. L., Shultz, S. 2021. Reproductive males are effective at managing conflict in captive Sulawesi crested macaques (Macaca nigra). American Journal of Primatology 83(7), e23266.

Group size, density, and composition significantly influence the expression of agonism and, as demography is frequently manipulated in captivity, natural mechanisms of conflict management may be disrupted. Here, we examine how changes to the social...

Martinic, G. 2021. Husbandry and healthcare of the Olive python (Liasis olivaceus). Animal Technology and Welfare 20(1), 44-50.

The article describes the care of the Olive python (Liasis olivaceus) including information on housing, feeding, handling, as well as the general health care of these animals. Some of the information presented is derived from...

Bailey, K. L., Bloomsmith, M. A., Michopoulos, V. et al. 2021. Influence of female coalitionary aggressive behavior on the success of male introductions to female groups of rhesus macaques (Macaca Mulatta). Applied Animal Behaviour Science 237, 105293.

Migration patterns of wild rhesus macaque males are often mimicked in captivity by introducing unfamiliar males to female groups every few years. This strategy prevents inbreeding and has been shown to encourage group stability once...

Arre, A. M., Horschler, D. J. 2021. Swimming and diving as social play in juvenile rhesus macaques (Macaca mulatta). Behaviour 158(6), 529-546.

Although play is ubiquitous throughout the animal kingdom, and in primates especially, the ultimate explanations and proximate mechanisms of play are not well understood. Previous research proposes that primate play may be important for the...

Yolles, J. N., Lee-Stubbs, R. B. 2021. Comparison of direct and indirect methods of measuring arterial blood pressure in healthy, anesthetized African green monkeys (Chlorocebus aethiops). JAALAS 60(2), 229-237.

Quantitative blood pressure measurement is a critical parameter for assessing cardiovascular health, monitoring physiologic status under anesthesia, and making clinical decisions. The placement of an arterial catheter is the most accurate way to measure blood...

Hall, K., Bryant, J., Staley, M. et al. 2021. Behavioural diversity as a potential welfare indicator for professionally managed chimpanzees (Pan troglodytes): Exploring variations in calculating diversity using species-specific behaviours. Animal Welfare 30(4), 381-392.

Behavioural diversity may serve as a positive indicator of animal welfare that can be applied in long-term monitoring schemes in managed settings (eg zoos, laboratories, farms). Behavioural diversity is often higher when animals live in...

Pomerantz, O., Capitanio, J. P. 2021. Temperament predicts the quality of social interactions in captive female rhesus macaques (Macaca mulatta). Animals 11(8), 2452.

Previous reports suggest that female macaques with greater similarity in emotionality and nervous temperament, as evaluated in a well-established BioBehavioral Assessment (BBA) at the California National Primate Research Center, were more likely to form successful...

Balasubramaniam, K. N., Beisner, B. A., McCowan, B. et al. 2021. Female social structure influences, and is influenced by, male introduction and integration success among captive rhesus macaques (Macaca mulatta). Behaviour 158(11), 1007–1042.

Animal social structure is influenced by multiple socioecological factors. Of these, the links between changes to group demography through the arrival of new individuals and residents' social structure remain unclear. Across seven groups of captive...

Ross, S. R., Lake, B. R., Fultz, A. et al. 2021. An evaluation of thermal imaging as a welfare monitoring tool for captive chimpanzees. Primates 62(6), 919-927.

Among the growing list of novel tools with which to assess animal welfare is the use of thermal (infrared) imaging. The technology has already been utilized to identify emotional arousal in several nonhuman primate species...

Crailsheim, D., Stüger, H., P., Kalcher-Sommersguter, E. et al. 2020. Early life experience and alterations of group composition shape the social grooming networks of former pet and entertainment chimpanzees (Pan troglodytes). PLOS ONE 15(1), e0226947.

The long-term effects of early life adversities on social capacities have been documented in humans and wild-caught former laboratory chimpanzees (Pan troglodytes). However, former pet and entertainment chimpanzees have received little attention to date. This...