Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Pomerantz, O., Terkel, J., Suomi, S. J. et al. 2012. Stereotypic head twirls, but not pacing, are related to a ‘pessimistic’-like judgment bias among captive tufted capuchins (Cebus apella). Animal Cognition 15(4), 689–698.

Abnormal stereotypic behaviour is widespread among captive non-human primates and is generally associated with jeopardized well-being. However, attributing the same significance to all of these repetitive, unvarying and apparently functionless behaviours may be misleading, as...

NC3Rs, University of Stirling. 2011. Common Marmoset Care [Online resource].

The three main divisions of 'marmosetcare.com' aim respectively to promote: an understanding of the range of behaviour in this species, placing this behaviour in the context of its natural habitat and promoting good welfare in...

Owen, Y., Amory, J. R. 2011. A case study employing operant conditioning to reduce stress of capture for red-bellied tamarins (Saguinus labiatus). Journal of Applied Animal Welfare Science 14(2), 124-137.

Traditional techniques used to capture New World monkeys, such as net capture, can induce high levels of acute stress detrimental to welfare. Alternatively, training nonhuman animals via operant conditioning to voluntarily participate in husbandry and/or...

Martin, A. L., Bloomsmith, M. A., Perlman, J. E. 2011. An assessment program to monitor behavior and evaluate treatment of behavioral problems. American Journal of Primatology 73(S1), 85. (34th Meeting of the American Society of Primatologists Scientific Program, Abstract #159)

At the Yerkes National Primate Center we have developed a system for behavioral assessment that includes these elements: frequent observation of behavior for all primates with a check sheet-type record; a quantitative system for recording...

Ekesbo, I. 2011. Sheep. In: Farm Animal Behavior: Characteristics for Assessment of Health and Welfare, 1st edition. Fraser, A. F. , Broom, D. M. (ed). CABI, Oxfordshire, UK. pp. 82-92.

Each chapter follows a consistent pattern describing the behavioral characteristics of the species featured. Reference is made to the natural state before domestication, leading us through the various changes to the present, demonstrating along the...

Watts, A. 2010. Thinking outside the box in box training. Tech Talk [The Newsletter for Laboratory Animal Science Technicians] 15(2), 3.

At the Oregon National Primate Research Center, we train animals to enter transfer boxes using positive reinforcement training (PRT), a type of training in which the trainer reinforces desired behaviors (such asentering the transfer box)...

Moreau, E. 2010. To squeeze or not to squeeze? A Discussion on LAREF, September, 2009. Laboratory Primate Newsletter 49(2), 3-4.

The discussion was started by the following questions: "Is the squeeze-back mechanism more or less stressful than the pole and collar system for removing a macaque from his cage for an IM (intramuscular) injection?" and...

McMillan, J. L., Galvan, A., Wichmann, T. et al. 2010. The use of positive reinforcement during pole and collar training of rhesus macaques (Macaca mulatta). American Association for Laboratory Animal Science [AALAS] Meeting Official Program, 705-706 (Abstract #P78).

The pole and collar method enables safe transfer of a monkey from their home environment to a restraint chair without sedation. The ability to conduct procedures with a conscious and cooperative subject is cost effective...

Egeler, J. L., Hoekwater, S., Hoffman, H. D. 2010. A novel approach for utilizing large group-housing style cages for nonhuman primates in toxicology studies. American Association for Laboratory Animal Science [AALAS] Meeting Official Program, 716 (Abstract #P110).

The ability to provide permanent group-housed caging for nonhuman primates involved in toxicology research is quickly becoming an important step in improving the overall quality of life for these animals. This type of caging offers...

Egeler, J. L., Hoekwater, S., Hoffman, H. D. 2010. Monitoring program for the treatment of nonhuman primates with behavioral disorders. American Association for Laboratory Animal Science [AALAS] Meeting Official Program, 717 (Abstract #P113).

Maintaining the psychologic wellbeing of nonhuman primates housed in a laboratory setting is an important aspect in providing the best possible care for these animals. Nonhuman primates kept in captivity can begin to display abnormal...

De Villiers, C., Seier, J. V. 2010. Stopping self injurious behaviour of a young male chacma baboon (Papio ursinus). Animal Technology and Welfare 9(2), 77-80.

While access to a foraging log had no curative effect on serious self-injurious biting of a single-caged subadult male baboon, transferring the animal to an outdoor section with compatible females in adjacent cages (allowing grooming...

Taylor K. 2010. Reporting the implementation of the three Rs in European primate and mouse research papers: Are we making progress? Alternatives to Laboratory Animals 38(6), 495-517.

It is now more than 20 years since both Council of Europe Convention ETS123 and EU Directive 86/609/EEC were introduced, to promote the implementation of the Three Rs in animal experimentation and to provide guidance...

Brilot, B. O., Asher, L., Bateson, M. 2010. Stereotyping starlings are more ‘pessimistic.’ Animal Cognition 13(5), 721–731.

Negative affect in humans and animals is known to cause individuals to interpret ambiguous stimuli pessimistically, a phenomenon termed ‘cognitive bias’. Here, we used captive European starlings (Sturnus vulgaris) to test the hypothesis that a...

Lee, D. R., Ely, J. J. 2009. Welfare and housing of chimpanzees in captive settings. American Journal of Primatology 71(S1), 105. (32nd Meeting of the American Society of Primatologists Scientific Program, Abstract #230)

Advances in facility design, healthcare, and other strategies have produced an excellent quality of life for chimpanzees (Pan troglodytes) in biomedical research. Historically, many facilities housed chimpanzees individually or in small groups (2–3 animals). Laboratory...

Crockett, C. M., Baker, K. C., Lutz, C. K. et al. 2009. Developing a reliable laboratory primate alopecia scoring system for interfacility collaboration and on-line training. American Journal of Primatology 71(S1), 73. (32nd Meeting of the American Society of Primatologists Scientific Program, Abstract #133)

Of the potential flags of impaired well-being in laboratory primates, alopecia has received particular regulatory focus, making it a top priority for behavioral managers. Consensus on a reliable alopecia scoring system used by multiple facilities...

Canadian Council on Animal Care. 2009. CCAC guidelines on: the care and use of farm animals in research, teaching and testing. Ottawa, Canada.

These guidelines aim to provide information for investigators, animal care committees, facility managers and animal care staff that will assist in improving both the care given to farm animals and the manner in which experimental...

McCusker, C., Elwood, R. W., Smith, T. E. 2007. Does cortisol provide an objective measure of subjective feelings? Maybe not. Animal Welfare 16(Supplement 1), 174 (Poster Abstract).

Although our results do not negate the use of cortisol as a welfare indicator in Lemur catta, they do highlight the myriad of behavioural and environmental factors in addition to stress that modify cortisol excretion...

LAREF [Laboratory Animal Refinement and Enrichment Forum] 2007. Chapter 7.4. Pole-and-collar training of macaques. In: Making Lives Easier for Animals in Research Labs: Discussions by the Laboratory Animal Refinement & Enrichment Forum. Baumans, V., Coke, C., Green, J., Moreau, E., Morton, D., Patterson-Kane, E., Reinhardt, A., Reinhardt, V., Van Loo, P. (eds), 127-130. Animal Welfare Institute, Washington, DC.

While strictly using positive reinforcement and applying patient gentle-firmness, most macaques can be trained to cooperate during the pole-attachment-chairing procedure. Some cannot be trained, because they have problems overcoming their often-legitimate mistrust of humans.

Nelson, R. J., Mandrell, T. D. 2005. Enrichment and nonhuman primates: "First, do no harm". ILAR Journal 46(2), 171-177.

Since the 1998 publication of The Psychological Well-Being of Nonhuman Primates by the National Research Council, and the 1991 implementation of the 1985 Animal Welfare Act Amendment, many formal and informal nonhuman primate enrichment programs...

Kulpa-Eddy, J. A., Taylor, S., Adams, K. M. 2005. USDA perspectives on environmental enrichment for animals. ILAR Journal 46(2), 83-94.

This article provides a brief historical background of the events and circumstances that led to the 1985 Animal Welfare Act (AWA) amendments. It describes the development of the regulations promulgated by the US Department of...

Reinhardt, V. 2004. Flaws in federal regulations pertaining to the welfare of primates kept in research institutions. Journal of Applied Animal Welfare Science 7(4), 273-276.

Federal welfare regulations for primates kept in research laboratories fail (1) to include recommendations pertaining to the legal requirement of the avoidance of stress and unnecessary discomfort during handling procedures, (2) to specify how the...

Reinhardt, V. 2003. Legal loophole for subminimal floor area for caged macaques. Journal of Applied Animal Welfare Science 6(1), 53-56.

The USDA regulations pertaining to the minimum space requirements of nonhuman primates and the fitting of elevated resting surfaces are contradictory. They implicitly condone the prevailing perch design that allows maximal usage of animal room...

National Research Council. 2003. Guidelines for the Care and Use of Mammals in Neuroscience and Behavioral Research. National Academic Press: Washington, DC, 223 pp.

Expanding on the National Research Council’s Guide for the Care and Use of Laboratory Animals, this book deals specifically with mammals in neuroscience and behavioral research laboratories. It offers flexible guidelines for the care of...

National Health and Medical Research Council [NHMRC] Animal Welfare Committee. 2003. Policy on the Care and Use of Non-Human Primates for Scientific Purposes. National Health and Medical Research Council: Canberra, Australia.
Bassett, L., Buchanan-Smith, H. M., McKinley, J. et al. 2003. Effects of training on stress-related behavior of the common marmost (Callithrix jacchus) in relation to coping with routine husbandry procedures. Journal of Applied Animal Welfare Science 6(3), 221-233.

Using positive reinforcement, J. McKinley trained 12 common marmosets (Callithrix jacchus) to provide urine samples on request. The study then exposed the marmosets to mildly stressful, routine husbandry procedures (i.e., capture and weighing). The nonhuman...