Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Lowe, G., McCane, B., Sutherland, M. et al. 2020. Automated collection and analysis of infrared thermograms for measuring eye and cheek temperatures in calves. Animals 10(2), 292.

As the reliance upon automated systems in the livestock industry increases, technologies need to be developed which can be incorporated into these systems to monitor animal health and welfare. Infrared thermography (IRT) is one such...

Espinoza, C., Lomax, S., Windsor, P. 2020. The effect of topical anaesthesia on the cortisol responses of calves undergoing dehorning. Animals 10(2), 312.

Dehorning causes pain and distress to cattle, and there is a need to provide effective and practical analgesia to improve animal welfare. We conducted an experiment to determine the effect of a modified post-operative topical...

Byrnes, E. E., Lear, K. O., Morgan, D. L. et al. 2020. Respirometer in a box: Development and use of a portable field respirometer for estimating oxygen consumption of large‐bodied fishes. Journal of Fish Biology 96(4), 1045-1050.

Respirometry has become the standard method for measuring the metabolic rate of fishes. Traditionally, respirometry has required the fish to be kept in captivity and tested under controlled conditions; however, many species do not readily...

MacAllister, R. P., Heagerty, A., Coleman, K. 2020. Behavioral predictors of pairing success in rhesus macaques (Macaca mulatta). American Journal of Primatology 82(1), e23081.

Pair housing is one of the most important components of behavioral management for caged macaques; however, it can result in aggression and injury if partners are incompatible. Knowing when to proceed and when to stop...

da Silva, A., Lima, M. R., Meletti, P. C. et al. 2020. Impact of environmental enrichment and social group size in the aggressiveness and foraging activity of Serrapinnus notomelas. Applied Animal Behaviour Science 224, 104943.

Fish are widely used in scientific research, and many species are bred for ornamental purposes and human consumption. Despite the large number of fish kept in captivity, research on the welfare of these animals has...

Veasey, J. 2020. Assessing the psychological priorities for optimising captive Asian elephant (Elephas maximus) welfare. Animals 10(1), 39.

The welfare status of elephants under human care has been a contentious issue for two decades or more in numerous western countries. Much effort has gone into assessing the welfare of captive elephants at individual...

Plangsangmas, T., Brown, J., Thitaram, C. et al. 2020. Circadian rhythm of salivary immunoglobulin A and associations with cortisol as a stress biomarker in captive Asian elephants (Elephas maximus). Animals 10(1), 157.

Salivary immunoglobulin A (sIgA) has been proposed as a potential indicator of welfare for various species, including Asian elephants, and may be related to adrenal cortisol responses. This study aimed to distinguish circadian rhythm effects...

Arrazola, A., Dicker, K., Vasseur, E. et al. 2020. The effect of early housing and companion experience on the grazing and ruminating behaviour of naïve heifers on pasture. Applied Animal Behaviour Science 226, 104993.

Calves reared on pasture learn to graze from their dam and conspecifics during weaning. Social learning can be beneficial for calf performance and welfare, and pair-housing and companionship on pasture have been proposed as management...

Pinheiro Machado, T. M., Pinheiro Machado Filho, L. C., Daros, R. R. et al. 2020. Licking and agonistic interactions in grazing dairy cows as indicators of preferential companies. Applied Animal Behaviour Science 227, 104994.

The quality of the social environment should be studied as one of the welfare components of dairy herds. Licking and preference between cows are important socio-positive experiences in this context.The aims of this study were...

Johnston, J. R., Meeker, T. L., Ramsey, J. K. et al. 2020. Utility of automated feeding data to detect social instability in a captive breeding colony of rhesus macaques (Macaca mulatta): A case study of intrafamily aggression. JAALAS 59(1), 46–57.

Some captive breeding colonies of rhesus macaques live in large outdoor multimale, multifemale social groups. These groups are composed of several matrilineal families, governed by a clear female dominance hierarchy. Aggression within the same or...

Mishra, P. S., Pal, A., Velankar, A. D. et al. 2020. Does rank rule? Rank-related grooming patterns in Nicobar long-tailed macaques Macaca fascicularis umbrosus. Primates 61(3), 443–453.

Primates maintain social bonds with specific individuals in the group by directing grooming toward them. Social grooming is often targeted toward individuals with whom the most benefits can be exchanged, which are usually the high-ranking...

Stocker, M. Loretto, M.-C., Sterck, E. H. M. et al. 2020. Cooperation with closely bonded individuals reduces cortisol levels in long-tailed macaques. Royal Society Open Science 7(5), 7191056.

Many animal species cooperate with conspecifics in various social contexts. While ultimate causes of cooperation are being studied extensively, its proximate causes, particularly endocrine mechanisms, have received comparatively little attention. Here, we present a study...

Hambrecht, S., Oerke, A.‐K., Heistermann, M. et al. 2020. Diurnal variation of salivary cortisol in captive African elephants (Loxodonta africana) under routine management conditions and in relation to a translocation event. Zoo Biology 39(3), 186–196.

The present study assessed the diurnal variation in salivary cortisol in captive African elephants during routine management (baseline) and in relation to a potential stressor (translocation) to evaluate to what extent acute stress may affect...

Reinhardt, V. (ed.) 2020. It’s Okay to Cry - Discussions by the Laboratory Animal Refinement & Enrichment Forum [LAREF], Volume V. Animal Welfare Institute, Washington, DC.

This is the 5th volume of selected discussions that took place on the electronic Laboratory Animal Refinement & Enrichment Forum between February 2016 and December 2019. The forum was created in October 2002; it allows...

Allanic, M., Hayashi, M., Matsuzawa, T., 2020. Investigating the function of mutual grooming in captive bonobos (Pan paniscus) and Chimpanzees (Pan troglodytes). Folia Primatologica 91, 481-494.

Social grooming is often exchanged between individuals in many primate species. Rates of bidirectional (or simultaneous mutual) grooming vary across primate species, and its function is not yet fully understood. For example, mutual grooming is...

Stevens, T., Williams, W. R. 2020. Tarps used as visual barriers decrease aggressive conflicts in baboons. Laboratory Animal Science Professional 8(5) (September/October), 72-74.

Nonhuman primate (NHP) colonies housed in research settings are manipulated frequently due to research protocols, for breeding, and for veterinary procedures. These manipulations come with maneuvering complex group dynamics that can be challenging for baboon...

Cassidy, L. C., Hannibal, D. L., Semple, S. et al. 2020. Improved behavioral indices of welfare in continuous compared to intermittent pair-housing in adult female rhesus macaques (Macaca mulatta). American Journal of Primatology 82(10), e23189.

Limiting opportunities for captive nonhuman primates (NHPs) to express species-specific social behaviors may disrupt the adaptive drive for social companionship and may lead to increases in coping behaviors and inactivity. While captive NHPs show improved...

Cloutier Barbour, C., Danforth, M. D., Murphy, H. et al. 2020. Monitoring great ape heart health through innovative electrocardiogram technology: Training methodologies and welfare implications. Zoo Biology 39(6), 443-447.

Assessing and treating cardiovascular disease (or heart disease) is a growing concern for institutions housing great apes, as it is a major cause of mortality in all four taxa managed in human care. As part...

Evison, E., McKenzie, A., Holmes, L. 2020. Social and environmental impacts on sleep in captive Asian elephants (Elephas maximus). Zoo Biology 39(6), 397-404.

Modern zoos strive to improve standards of animal management, husbandry and welfare of their animals as part of a continual evaluation process. Elephants (Elephantidae) have received particular attention in recent years due to the challenge...

Glaeser, S. S., Edwards, K. L., Wielebnowski, N. et al. 2020. Effects of physiological changes and social life events on adrenal glucocorticoid activity in female zoo-housed Asian elephants (Elephas maximus). PLOS ONE 15(11), e0241910.

Ensuring good health and welfare is an increasingly important consideration for conservation of endangered species and includes breeding of individuals managed under human care. Understanding how factors in the captive environment affect individual animal wellbeing...

Rothwell, E. S., Carp, S. B., Savidge, L. E. et al. 2020. Relationship tenure differentially influences pair-bond behavior in male and female socially monogamous titi monkeys (Callicebus cupreus). American Journal of Primatology 82(10), e23181.

Pair-bonded primates have uniquely enduring relationships and partners engage in a suite of behaviors to maintain these close bonds. In titi monkeys, pair bond formation has been extensively studied, but changes across relationship tenure remain...

Ruberto, T., Talbot, J. L., Reddon, A. R. 2020. Head up displays are a submission signal in the group-living daffodil cichlid. Behavioural Processes 181, 104271.

Dominance hierarchies can reduce conflict within social groups and agonistic signals can help to establish and maintain these hierarchies. Behaviours produced by subordinates in response to aggression are often assumed to function as signals of...

de Freslon, I., Peralta, J. M., Strappini, A. C. et al. 2020. Understanding allogrooming through a dynamic social network approach: An example in a group of dairy cows. Frontiers in Veterinary Science 7, 535.

For gregarious species such as domestic cattle, the social environment is a very important determinant of their welfare and fitness. Understanding the complexity of cows' relationships can assist the development of management practices that are...

Frahm, S., Di Giminiani, P., Stanitznig, A. et al. 2020. Nociceptive threshold of calves and goat kids undergoing injection of clove oil or isoeugenol for disbudding. Animals 10(7), 1228.

In this preliminary study, we compared changes in mechanical nociceptive thresholds (MNT) of calves and goat kids injected with clove oil or isoeugenol under the horn bud as a potential, more welfare-friendly alternative to hot-iron...

Ordóñez-Grande, B., Guerreiro, P. M., Sanahuja, I. et al. 2020. Evaluation of an acute osmotic stress in European sea bass via skin mucus biomarkers. Animals 10(9), 1546.

European sea bass is a marine teleost which can inhabit a broad range of environmental salinities. So far, no research has studied the physiological response of this fish to salinity challenges using modifications in skin...