Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Gilberto, D., Michener, M., Smith, B. et al. 2022. Chronic collection of cerebrospinal fluid from rhesus macaques (Macaca mulatta) with cisterna magna ports: Update on refinements. Comparative Medicine 72(1), 45-49.

More than 20 y ago, we developed an animal model for chronic and continuous collection of cerebrospinal fluid (CSF) from conscious rhesus macaques. Since our previous publication in 2003, we have successfully implanted 168 rhesus...

Nguyen, T. T. H., Nguyen, T. M. D. 2022. Non-invasive assessment of physiological stress in captive common palm civets (Paradoxurus hermaphroditus) in Vietnam. Journal of Animal Behaviour and Biometeorology 10(2), 2219.

Common Palm Civet (Paradoxurus hermaphroditus) is a rare mammal appearing in South and Southeast Asia, first described in 1777. Because of the detrimental effects of stress, studying stress responses is important for this wildlife conservation...

Stammen, R. L., Cohen, J. K., Connor-Stroud, F. R. et al. 2022. Enhancing animal welfare by providing custom caging space for nonhuman primates. Laboratory Animal Science Professional 10(1) (January/February), 20-23.

The YNPRC recently renovated two NHP housing areas with a novel facility design and equipped with a customized caging system that offers additional outdoor access, socialization, and enrichment opportunities for NHPs assigned to infectious disease...

Buckmaster, C. L., Levesque, D., LaFollette, M. et al. 2022. Five hot topics in refinement of nonhuman primate neuroscience research. Laboratory Animal Science Professional 10(1) (January/February), 24-26.

Members of the North American 3Rs Collaborative (NA3RsC) refinement initiative have chosen to summarize developments in five hot topics of interest: 1. Tips for welfare-friendly transport, chairing, and restraint; 2. Guidance on refining food and...

Hirata, S. 2022. Sky after 30 years: A brief biography of three biomedical research chimpanzees in Japan. Primates 63(2), 105–108.

This article describes the strategies employed by Kumamoto Sanctuary in Japan to integrate 3 retired chimpanzees – who each spent 30 years singly housed in a biomedical facility – with the sanctuary’s other residents.

Jardat, P., Calandreau, L., Ferreira, V. et al. 2022. Pet-directed speech improves horses' attention toward humans. Scientific Reports 12(1), 4297.

In a recent experiment, we showed that horses are sensitive to pet-directed speech (PDS), a kind of speech used to talk to companion animals that is characterized by high pitch and wide pitch variations. When...

Thompson, J. S., Hudson, C. D., Huxley, J. N. et al. 2022. A randomised controlled trial to evaluate the impact of indoor living space on dairy cow production, reproduction and behaviour. Scientific Reports 12(1), 3849.

As a global society, we have a duty to provide suitable care and conditions for farmed livestock to protect animal welfare and ensure the sustainability of our food supply. The suitability and biological impacts of...

Alejandro, J., Huffman, M. A., Bercovitch, F. B. 2022. Costs and benefits of living in a vegetated, compared with non‐vegetated, enclosure in male Japanese macaques (Macaca fuscata). Zoo Biology 41(2), 97-107.

Improving captive environments for primates has been an important tool to enhance animal welfare. One method has been to provide primates with naturalistic vegetated enclosures to promote species-specific behaviors, enhancing interactions with their social and...

Lutz, C. K., Coleman, K., Hopper, L.M. et al. 2022. Nonhuman primate abnormal behavior: Etiology, assessment, and treatment. American Journal of Primatology 84(6), e23380.

Across captive settings, nonhuman primates may develop an array of abnormal behaviors including stereotypic and self-injurious behavior. Abnormal behavior can indicate a state of poor welfare, since it is often associated with a suboptimal environment...

Deacon, F., Daffue, W., Nel, P. 2022. Effective field immobilisation and capture of giraffe (Giraffa camelopardalis). Animals 12(10), 1290.

One of the highest occurrences of mortalities among giraffes (Giraffa camelopardalis) takes place during immobilisations, captures and translocations. Common mistakes, human error, unforeseen risks, the awkward anatomy and the sheer size of the animal are...

Schilling, A.-K., Mazzamuto, M. V., Romeo, C. 2022. A review of non-invasive sampling in wildlife disease and health research: What’s new? Animals 12(13), 1719.

In the last decades, wildlife diseases and the health status of animal populations have gained increasing attention from the scientific community as part of a One Health framework. Furthermore, the need for non-invasive sampling methods...

Knaebe, B., Weiss, C. C., Zimmermann, J. et al. 2022. The promise of behavioral tracking systems for advancing primate animal welfare. Animals 12(13), 1648.

Recent years have witnessed major advances in the ability of computerized systems to track the positions of animals as they move through large and unconstrained environments. These systems have so far been a great boon...

Witkowska, D., Ponieważ, A. 2022. The effect of housing system on disease prevalence and productive lifespan of dairy herds—A case study. Animals 12(13), 1610.

Selected technological solutions can impact health status of animals. The aim of this case study was to determine the effect of different housing systems on disease prevalence and the productive lifespan of dairy cows. In...

de Andrade Kogima, P., Diesel, T. A., Vieira, F. M. C. et al. 2022. The welfare of dairy cows in pasture, free stall, and compost barn management systems in a Brazilian subtropical region. Animals 12(17), 2215.

The effect of milk production systems on the welfare of dairy cows has been studied worldwide, but studies that compare pasture-based, compost barn, and free stall systems, according to animal welfare, are more scarce. In...

Winther Christensen, J., Gargulak Andersen, A., Nymark Skovbo, K. et al. 2022. Shelter use by horses during summer in relation to weather conditions and horsefly (Tabanidae) prevalence. Applied Animal Behaviour Science 253, 105676.

National legislation requires shelter access for horses kept outside during winter, whereas there are no requirements for shelter access to provide shade and a refuge from biting insects during summer. This study investigated use of...

Kjellberg, L., Sassner, H., Yngvesson, J. 2022. Horses’ resting behaviour in shelters of varying size compared with single boxes. Applied Animal Behaviour Science 254, 105715.

Lying behaviour in horses is affected by factors such as bedding, housing and available lying area. For group-housed horses, social factors may influence access to available lying area and affect their ability to meet their...

Franklin, A. N., Martin, A. L., Perlman, Siti Norsyuhada Kamaluddin et al. 2022. Functional analysis and successful treatment of a captive rhesus macaque’s disruptive behavior. Journal of Applied Animal Welfare Science 25(3), 287-296.

Functional analysis (FA) is a method developed and used by behavior analysts in human clinical settings to identify possible environmental variables that reinforce undesired behavior. FA is increasingly being applied to better understand the behavior...

Mastellone, V., Musco, N., Infascelli, F. et al. 2022. Higher forage:concentrate ratio and space availability may favor positive behaviors in dairy cows. Journal of Veterinary Behavior 51, 16-22.

A novel livestock management system (LMS) for dairy cows mainly based on a high forage:concentrate ratio, no silage, and large outdoor paddocks, has been introduced in Italy during the last five years. It was proved...

Shewbridge Carter, L., Haskell, M. J., Ball, D. et al. 2022. Dairy cows value an open area for lying down. PLOS ONE 17(5), e0268238.

As dairy cows are being housed for longer periods, with all-year-round housing growing in popularity, it is important to ensure housed environments are meeting the needs of cows. Dairy cows are motivated to access open...

Sohel Khan, A., Lea, S. E. G., Chand, P. et al. 2022. Predictors of psychological stress and behavioural diversity among captive red panda in Indian zoos and their implications for global captive management. Scientific Reports 12(1), 14034.

At high elevations, biodiversity is at elevated risk from extinctions due to rapid environmental changes. In the most of its range in Himalayas, the red panda, an endangered species, is struggling to survive in the...

Thompson, J. S., Hudson, C. D., Huxley, J. N. et al. 2022. A randomised controlled trial to evaluate the impact of indoor living space on dairy cow production, reproduction and behaviour. Scientific Reports 12(1), 3849.

As a global society, we have a duty to provide suitable care and conditions for farmed livestock to protect animal welfare and ensure the sustainability of our food supply. The suitability and biological impacts of...

Dickson, E. J., Campbell, D. L. M., Lee, C. et al. 2022. Beef cattle preference and usage of environmental enrichments provided simultaneously in a pasture-based environment. Animals 12(24), 3544.

Environmental enrichment can improve livestock welfare through increasing environmental complexity to promote a greater range of natural behaviours. However, there is limited understanding of the need for and impacts of enrichments for extensively managed beef...

Fink, L. B., Mukobi, A., Gruber, L. et al. 2022. Longitudinal analysis of variability in fecal glucocorticoid metabolite concentrations in three orangutans (Pongo pygmaeus pygmaeus and Pongo pygmaeus abelii) before, during, and after transition from a regular habitat environment to temporary housing in indoor holding facilities. Animals 12(23), 3303.

Considerable research has been conducted on the effects of inter-institutional transfers, but far less consideration has been given to intra-institutional transfers and extended housing in off-habitat holding. On 15 May 2018, The Oregon Zoo’s orangutans...

Laméris, D. W., Verspeek, J., Salas, M. et al. 2022. Evaluating self-directed behaviours and their association with emotional arousal across two cognitive tasks in bonobos (Pan paniscus). Animals 12(21), 3002.

Self-directed behaviours (SDBs) are widely used as markers of emotional arousal in primates, and are commonly linked to negative arousal, or are used as indicators of stress or poor welfare. However, recent studies suggest that...

Popescu, S., Lazar, E. A., Borda, C. et al. 2022. Changes in management, welfare, emotional satate, and human-related docility in stallions. Animals 12(21), 2981.

Despite an increase in awareness of their essential needs, many stallions continue to be kept in conditions limiting their social interactions and movement. To supplement the studies which highlight the effects of these practices on...