Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Lee, S., Su, H. 2009. Applications of positive reinforcement training in captive orangutans (Pongo pygmaeus) and Taiwanese macaques (Macaca cyclopsis). American Journal of Primatology 71(S1), 34. (32nd Meeting of the American Society of Primatologists Scientific Program, Abstract #16)

PRT is a good way of shaping the behavior of captive animals and doing so can make the animals less stressed to promote their well being. PRT is commonly used by captive animal organizations in...

Hohmann, G., Mundry, R., Deschner, T. 2009. The relationship between socio-sexual behavior and salivary cortisol in bonobos: tests of the tension regulation hypothesis. American Journal of Primatology 71(3), 223-232.

Bonobos are known for their pacifistic behavior and their large repertoire of behaviors that are thought to serve conflict resolution. One is an unusual form of ventro-ventral mounting that facilitates genital contacts (GC). Various hypotheses...

Fernström, A. L., Fredlund, H., Spångberg, M. et al. 2009. Positive reinforcement training in rhesus macaques - training progress as a result of training frequency. American Journal of Primatology 71(5), 373-379.

Positive reinforcement training (PRT) efficiency was examined as a function of training frequency in 33 pair- or triple-housed female rhesus macaques. The animals were trained three times a week, once a day or twice a...

Clay, A. W., Bloomsmith, M. A., Jackson Marr, M. et al. 2009. Habituation and desensitization as methods for reducing fearful behavior in singly housed rhesus macaques. American Journal of Primatology 71(1), 30-39.

Operant conditioning using positive reinforcement techniques has been used extensively in the management of nonhuman primates in both zoological and laboratory settings. This research project was intended to test the usefulness of counter-conditioning techniques in...

Carrasco, L., Colell, M., Calvo, M. et al. 2009. Benefits of training/playing therapy in a group of captive lowland gorillas (Gorilla gorilla gorilla). Animal Welfare 18(1), 9-19.

Adding a few minutes of positive human interaction per animal per week to the management of captive gorillas resulted in improved well-being in several areas: the drop in abnormal behaviours, behaviours directed at the public...

Brunelli, R. L., Gottlieb, D., Holcomb, K. et al. 2009. Effects of positive reinforcement training on infant behavioral development in nursery-reared rhesus macaques (Macaca mulatta). American Journal of Primatology 71(S1), 74. (32nd Meeting of the American Society of Primatologists Scientific Program, Abstract #136)

At the California National Primate Research Center, one key to long-term success of macaque breeding colonies is to develop effective infant-rearing strategies that minimize the emergence of behavioral pathologies, which can be one indicator of...

Brent, L. 2009. Long-term care of chimpanzees: the role of sanctuaries. American Journal of Primatology 71(S1), 106. (32nd Meeting of the American Society of Primatologists Scientific Program, Abstract #231)

Chimpanzees (Pan troglodytes) have served in biomedical and behavioral research since the early 1900s and captive breeding programs to supply chimpanzees have been common since the 1960’s. The captive research population reached a peak of...

Gattermann, R., Johnston, J., Mcphee, M. E. et al. 2008. Golden hamsters are nocturnal in captivity but diurnal in nature. Biology Letters 4(3), 253-255.

Daily activity rhythms are nearly universal among animals and their specific pattern is an adaptation of each species to its ecological niche. Owing to the extremely consistent nocturnal patterns of activity shown by golden hamsters...

Branson, E. J. (Ed.) 2008. Fish Welfare. Blackwell Publishing Ltd: Oxford, UK, 300 p.

Fish have the same stress response and powers of nociception as mammals. Their behavioural responses to a variety of situations suggest a considerable ability for higher level neural processing – a level of consciousness equivalent...

Shutt, K., MacLarnon, A., Heistermann, M. et al. 2007. Grooming in Barbary macaques: better to give than receive? Biology Letters 3(3), 231-233.

It is well established that grooming underpins sociality in group-living primates, and a number of studies have documented the stress-reducing effects of being groomed. In this study, we quantified grooming behaviour and physiological stress (assessed...

Schapiro, S. J., Laule, G., Seelig, D. 2007. "Applied behavior" panel discussion. Journal of Applied Animal Welfare Science 10(1), 79-81.

Adriane and Kris just trained eight rhesus monkeys to present their arms in the blood sleeve for blood samples, and it took, on average ... 8 months ... 160 minutes spread out into 40 sessions.

Munds, R. A., Best, K., Hoppy, P. et al. 2007. Captive lemur response to two types of natural enrichment. American Journal of Physical Anthropology 132(S44), 175 (76th Annual Meeting of the American Association of Physical Anthropologists Program, Abstract).

Enrichment has been known to increase the well being and species typical behavior of captive animals. While much research has been done on the effectiveness of enrichment or captive monkeys and apes, research on enrichment...

McMillan, J. L., Perlman, J. E., Bloomsmith, M. A. 2007. Components of an animal training program at a large institution. American Journal of Primatology 69(S1), 117. (30th Meeting of the American Society of Primatologists Scientific Program, Abstract #177)

The application of positive reinforcement training (PRT) has increased in zoological, laboratory, and research settings in recent years, however there is little literature pertaining to the development and implementation of such programs. Over the past...

Mallapur, A., Waran, N., Sinha, A. 2007. A note on enrichment for captive lion-tailed macaques (Macaca silenus). Applied Animal Behaviour Science 108(1-2), 191-195.

Two enrichment techniques were devised with the aim of reducing stress and improving welfare for captive lion-tailed macaques in an Indian zoo. In Study A, a log, cotton ropes and a feeding basket were added...

Maloney, M. A., Baker, K. C., Griffis, C. et al. 2007. Behavioral responses by singly-housed adult rhesus macaques (Macaca mulatta) during human interaction and positive reinforcement training. American Journal of Primatology 69(S1), 53. (30th Meeting of the American Society of Primatologists Scientific Program, Abstract #49)

Males complied with significantly more commands, and overall learned significantly more basic husbandry commands than females. Trainers should expect agonistic responses to increase throughout the training process.

LAREF [Laboratory Animal Refinement and Enrichment Forum] 2007. Chapter 7.4. Pole-and-collar training of macaques. In: Making Lives Easier for Animals in Research Labs: Discussions by the Laboratory Animal Refinement & Enrichment Forum. Baumans, V., Coke, C., Green, J., Moreau, E., Morton, D., Patterson-Kane, E., Reinhardt, A., Reinhardt, V., Van Loo, P. (eds), 127-130. Animal Welfare Institute, Washington, DC.

While strictly using positive reinforcement and applying patient gentle-firmness, most macaques can be trained to cooperate during the pole-attachment-chairing procedure. Some cannot be trained, because they have problems overcoming their often-legitimate mistrust of humans.

Koski, S. E., Sterck, E. H. M. 2007. Triadic postconflict affiliation in captive chimpanzees: does consolation console? Animal Behaviour 73(1), 133-142.

Consolation is a triadic postconflict interaction between a conflict participant and an uninvolved third party. We tested whether consolation alleviates postconflict stress in captive chimpanzees, Pan troglodytes. In addition, we examined whether consolation is a...

Hill, A. N., Nash, L. T. 2007. Social and hygienic functions of grooming in captive Papio hamadryas. American Journal of Primatology 69(S1), 107. (30th Meeting of the American Society of Primatologists Scientific Program, Abstract #157)

Social grooming may have both social and hygienic functions. For this analysis, we assume the ‘pick’ grooming method is more effective at cleaning than stroke and social grooming on parts inaccessible to the groomee is...

Griffis, C., Bloomsmith, M. A., Baker, K. C. et al. 2007. Abnormal behavior as a factor of compliance with positive reinforcement training for singly-housed adult rhesus macaques (Macaca mulatta). American Journal of Primatology 69(S1), 93. (30th Meeting of the American Society of Primatologists Scientific Program, Abstract #128)

Positive reinforcement training is an important element of behavioral management programs for nonhuman primates. However, more empirical information is needed to determine whether animals identified for intervention will engage in such training, affecting the amount...

Crast, J. 2007. Socially-mediated learning in groups of primates: models and methods. American Journal of Primatology 69(S1), 74. (30th Meeting of the American Society of Primatologists Scientific Program, Abstract #90)

An ethological understanding of a behavioral phenomenon incorporates four levels of explanation: development, mechanism, function, and evolution. The phenomenon of socially-mediated learning has garnered a great deal of attention from ethologists, prominently including primatologists. Gregarious...

Conour, L. A., Murray, K. A., Brown, M. J. 2006. Preparation of animals for research -- Issues to consider for rodents and rabbits. ILAR Journal 47(4), 283-293.

This article provides details to consider when preparing to use animals in biomedical research. The stress of transport and receipt of animals into a new environment mandate the need for a period of stabilization and...

Capitanio, J. P., Kyes, R. C., Fairbanks, L. A. 2006. Considerations in the selection and conditioning of Old World monkeys for laboratory research: Animals from domestic sources. ILAR Journal 47(4), 294-306.

Preparation of domestically bred animals for research usually involves some combination of social separation, relocation, resocialization, alterations in physical space, photoperiod, and diet, as well as exposure to novel environments. The research literature that has...

Bloomsmith, M. A., Schapiro, S. J., Strobert, E. A. 2006. Preparing chimpanzees for laboratory research. ILAR Journal 47(4), 316-325.

The chimpanzee is the only representative of the Great Apes that is extensively involved in biomedical research in primate laboratories. These apes are used as animal models in a variety of studies, including research on...

Huntingford, F. A., Adams, C., Braithwaite, V. A. et al. 2006. Current issues in fish welfare. Journal of Fish Biology 68(2), 332-372.

In common with all vertebrates, fish respond to environmental challenges with a series of adaptive neuro‐endocrine adjustments that are collectively termed the stress response. These in turn induce reversible metabolic and behavioural changes that make...

Skoumbourdis, E. K., Potratz, K. 2005. Diazepam is more effective than midazolam when used as an aid in chair training non-human primates. American Journal of Primatology 66(S1), 164. (28th Meeting of the American Society of Primatologists Scientific Program, Abstract #176)

Non-human primates (NHPs) are utilized frequently in biomedical research and can be difficult and sometimes dangerous to handle. Because of this, restraint is sometimes necessary for data collection. Restraint chair training is generally a straightforward...