Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Benson, E., Weiher, J., Alphin, R. et al. 2018. Evaluation of two compressed air foam systems for culling caged layer hens. Animals 8(5), 61.

Outbreaks of avian influenza (AI) and other highly contagious poultry diseases continue to be a concern for those involved in the poultry industry. In the situation of an outbreak, emergency depopulation of the birds involved...

Shearer, J. 2018. Euthanasia of cattle: Practical considerations and application. Animals 8(4), 57.

Acceptable methods for the euthanasia of cattle include overdose of an anesthetic, gunshot and captive bolt. The use of anesthetics for euthanasia is costly and complicates carcass disposal. These issues can be avoided by use...

Woolcott, C., Torrey, S., Turner, P. et al. 2018. Evaluation of two models of non-penetrating captive bolt devices for on-farm euthanasia of turkeys. Animals 8(3), 42.

On-farm euthanasia is a critical welfare issue in the poultry industry and can be particularly difficult to perform on mature turkeys due to their size. We evaluated the efficacy of two commercially available non-penetrating captive...

Martin, J., Sandercock, D., Sandilands, V. et al. 2018. Welfare risks of repeated application of on-farm killing methods for poultry. Animals 8(3), 39.

Council Regulation (EC) no. 1099/2009 on the protection of animals at the time of killing restricts the use of manual cervical dislocation in poultry on farm in the European Union (EU) to birds weighing up...

Gurung, S., White, D., Archer, G. et al. 2018. Evaluation of alternative euthanasia methods of neonatal chickens. Animals 8(3), 37.

Hatched male layer chicks are currently euthanized by maceration in the United States. Public concerns on the use of maceration have led to the search for alternative methods. We hypothesized that gas inhalation and low...

Martin, J., Sandilands, V., Sparrey, J. et al. 2018. On farm evaluation of a novel mechanical cervical dislocation device for poultry. Animals 8(1), 10.

Urgent development of alternative on-farm killing methods for poultry is required following the number restrictions placed on the use of traditional manual cervical dislocation by European Legislation (EU 1099/2009). Alternatives must be proven to be...

Kittelsen, K. E., Granquist, E. G., Aunsmo, A. L. et al. 2018. An evaluation of two different broiler catching methods. Animals 8(8), 141.

Catching is the first step in the pre-slaughter chain for broiler chickens. The process may be detrimental for animal welfare due to the associated handling. The aim of this pilot study was to compare two...

Chatigny, F., Groman, D. B., Martinson, S. A. et al. 2018. Evaluation of tissue changes following intramuscular infiltration of lidocaine in rainbow trout Oncorhynchus mykiss. Journal of Fish Biology 92(4), 888-900.

Rainbow trout Oncorhynchus mykiss were infiltrated with either saline or lidocaine adjacent to the dorsal fin to assess histopathological changes. Infiltration was done as if it were being used as a local anaesthetic. Tissue lesions...

Witaifi, A. A., Ali, A. B. A., Siegford, J. M. 2018. Stall and feed bunk stocking rates impact cows' diurnal behavior and activity in automatic milking system farms. Journal of Veterinary Behavior 24, 48-55.

High stall stocking rates have been shown to alter behavior of cows in parlor-milked systems; however, no studies have examined stocking rates for cows milked with automatic milking systems (AMSs). Therefore, we examined the influence...

Zepp, M., Louton, H., Erhard, M. et al. 2018. The influence of stocking density and enrichment on the occurrence of feather pecking and aggressive pecking behavior in laying hen chicks. Journal of Veterinary Behavior 24, 9-18.

The housing conditions and environments experienced during the rearing period can influence the development of feather pecking in chickens during this time and in the subsequent laying period. The aim of this study was to...

Schiffer, K. J., Retz, S. K., Algers, B. 2017. Assessment of stun quality after gunshot used on cattle: a pilot study on effects of diverse ammunition on physical signs displayed after the shot, brain tissue damage and brain haemorrhages. Animal Welfare 26(1), 95-109.

Moving the slaughter process from the abattoir to the animals' familiar environment has the potential to reduce pre-mortal stressors to a minimum and contribute considerably to improved animal welfare at slaughter. On-farm stunning and killing...

Walsh, J., Percival, A., Turner, P. 2017. Efficacy of blunt force trauma, a novel mechanical cervical dislocation device, and a non-penetrating captive bolt device for on-farm euthanasia of pre-weaned kits, growers, and adult commercial meat rabbits. Animals 7(12), 100.

The commercial meat rabbit industry is without validated on-farm euthanasia methods, potentially resulting in inadequate euthanasia protocols. We evaluated blunt force trauma (BFT), a mechanical cervical dislocation device (MCD), and a non-penetrating captive bolt device...

Scott, K. E., Bracchi, L. A., Lieberman, M. T. et al. 2017. Evaluation of best practices for the euthanasia of zebra finches (Taeniopygia guttata). JAALAS 56(6), 802-806.

Although zebra finches (Taeniopygia guttata) have been used in biomedical research for many years, no published reports are available about euthanizing these small birds. In this study, we compared 5 methods for zebra finch euthanasia...

Vargas-Galicia, A. J., Sosa-Montes, E. Rodríguez-Ortega, L. T. et al. 2017. Effect of litter material and stocking density on bone and tendon strength, and productive performance in broilers. Canadian Journal of Animal Science 97(4), 673-682.

Litter material and stocking density were evaluated on welfare-related variables and productive performance in broilers. Male chicks (n = 744, “Ross 308” strain) were raised on either tezontle (TEZ) or wood shavings (WS) litter, with...

Yin, L., Yang, H., Xu, L. et al. 2017. Feather performance, walking ability, and behavioral changes of geese in response to different stocking densities. Applied Animal Behaviour Science 196, 108-112.

In recent decades, goose production has become more specialized and widespread, and rearing geese in plastic wire-floor pens is common in China. This type of rearing pattern is more productive than other rearing patterns since...

Flint, M., Mills, P. C., Loban, F. et al. 2017. Development of a humane slaughter device for green turtles for use by traditional owners in the Torres Strait Islands, Australia. PLOS ONE 12(1), e0167849.

Marine turtles are caught and slaughtered for consumption as part of traditional indigenous community harvest in Australia as well as in many countries in which marine turtles can be found. However, changes to the Animal...

Bermejo-Poza, R., De la Fuente, J., Pérez, C. 2016. Reducing the effect of pre-slaughter fasting on the stress response of rainbow trout (Oncorhynchus mykiss). Animal Welfare 25(3), 339-346.

Fasting is commonly used in aquaculture to empty the gut before slaughter, but little is known about how feeding frequency before fasting affects the stress response of trout. To find out more, 240 rainbow trout...

Gilliam, J. N., Shearer, J. K., Bahr, R. J. et al. 2016. Evaluation of brainstem disruption following penetrating captive-bolt shot in isolated cattle heads: comparison of traditional and alternative shot-placement landmarks. Animal Welfare 25(3), 347-353.

Currently recommended landmarks for captive-bolt euthanasia of cattle often result in failure to penetrate the brainstem. The purpose of this study was to evaluate the ability to disrupt the brainstem by placing the shot at...

Martin, J. E., McKeegan, D. E. F., Sparrey, J. et al. 2016. Comparison of novel mechanical cervical dislocation and a modified captive bolt for on-farm killing of poultry on behavioural reflex responses and anatomical pathology. Animal Welfare 25(2), 227-241.

An alternative emergency method for killing poultry on-farm is required following European legislation changes (EU 1099/2009), which heavily restricts the use of manual cervical dislocation. This study investigated the kill efficacy of two mechanical methods...

Kanghae, H., Thongprajukaew, K., Jatupornpitukchat, S. et al. 2016. Optimal?rearing density for head?starting green turtles (Chelonia mydas Linnaeus, 1758). Zoo Biology 35(5), 454-461.

While ex situ conservation programs of juvenile green turtles (Chelonia mydas Linnaeus, 1758), before release to natural habitats, have been conducted in several countries, the optimal‐stocking density for husbandry has not yet been reported. The...

Crast, J., Bloomsmith, M. A., Jonesteller, T. 2015. Effects of changing housing conditions on mangabey behavior (Cercocebus atys): Spatial density, housing quality, and novelty effects. American Journal of Primatology 77(9), 1001-1014.

The separate influences of spatial density and housing quality on the behavior of captive animals are difficult to measure because the two factors are often intrinsically linked. Here, we recorded affiliative and agonistic behavior in...

Pearson, B. L., Reeder, D. M., Judge, P. G. 2015. Crowding increases salivary cortisol but not self-directed behavior in captive baboons. American Journal of Primatology 77, 462-67.

Reduced space can lead to crowding in social animals. Crowding increases the risk of agonistic interactions that, in turn, may require additional physiological defensive coping mechanisms affecting health. To determine the stress induced from increased...

Lambeth, S. P., Schapiro, S. J., Bernacky, B. J. et al. 2013. Establishing 'quality of life' parameters using behavioural guidelines for humane euthanasia of captive non-human primates. Animal Welfare 22(4) 429-435.

Chronic pain and distress are universally accepted conditions that may adversely affect an animal’s quality of life (QOL) and lead to the humane euthanasia of an animal. At most research institutions and zoological parks in...

Warwick, C., Arena, P., Lindley, S. et al. 2013. Assessing reptile welfare using behavioural criteria. In Practice 35(3), 123-131.

While clinical reptile medicine as a science is in its ascendancy among veterinary surgeons and other interested groups, familiarity with the often related issue of reptilian behavioural and psychological health appears less common. Behavioural change...

Howard, B., Nevalainen, T., Perretta, G. (ed). 2010. The COST Manual of Laboratory Animal Care and Use: Refinement, Reduction, and Research (1st Ed). CRC Press, Boca Raton, FL.

COST Action B-24 established four working groups to research and discuss issues relevant to laboratory animal science. These included the housing of animals, environmental needs, refinement of procedures, genetically modified animals, and cost-benefit analysis. Based...