Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Schoiswohl, J., Stanitznig, A., Waiblinger, S. et al. 2020. Suppression of horn growth in cattle by clove oil and isoeugenol. Journal of Veterinary Behavior 36, 1-3.

The purpose of the disbudding of cattle is to decrease the number and severity of both deliberate and accidental injuries to other animals or workers caused by horned animals. The most commonly used method is...

Cloutier Barbour, C., Danforth, M. D., Murphy, H. et al. 2020. Monitoring great ape heart health through innovative electrocardiogram technology: Training methodologies and welfare implications. Zoo Biology 39(6), 443-447.

Assessing and treating cardiovascular disease (or heart disease) is a growing concern for institutions housing great apes, as it is a major cause of mortality in all four taxa managed in human care. As part...

Lecorps, B., Nogues, E., von Keyserlingk, M. A. G. et al. 2020. Pessimistic dairy calves are more vulnerable to pain-induced anhedonia. PLOS ONE 15(11), e0242100.

Pain induces deficits in appreciation of rewards (i.e. anhedonia) and variation in response to pain may be partly explained by individual differences in general expectations (i.e. optimism). Dairy calves are routinely subjected to painful procedures...

van der Vinne, V., Pothecary, C. A., Wilcox, S. L. et al. 2020. Continuous and non-invasive thermography of mouse skin accurately describes core body temperature patterns, but not absolute core temperature. Scientific Reports 10(1), 20680.

Body temperature is an important physiological parameter in many studies of laboratory mice. Continuous assessment of body temperature has traditionally required surgical implantation of a telemeter, but this invasive procedure adversely impacts animal welfare. Near-infrared...

Cortese, M., Brščić, M., Ughelini, N. et al. 2020. Effectiveness of stocking density reduction on mitigating lameness in a Charolais finishing beef cattle farm. Animals 10(7), 1147.

This study aimed at assessing whether a reduction in stocking density (SKD) would mitigate lameness and positively affect the performance and health of Charolais bulls in an Italian commercial farm. Bulls were distributed in groups...

Frahm, S., Di Giminiani, P., Stanitznig, A. et al. 2020. Nociceptive threshold of calves and goat kids undergoing injection of clove oil or isoeugenol for disbudding. Animals 10(7), 1228.

In this preliminary study, we compared changes in mechanical nociceptive thresholds (MNT) of calves and goat kids injected with clove oil or isoeugenol under the horn bud as a potential, more welfare-friendly alternative to hot-iron...

McFarland, R., Barrett, L., Fuller, A. et al. 2020. Infrared thermography cannot be used to approximate core body temperature in wild primates. American Journal of Primatology 82, e23204.

Understanding the physiological processes that underpin primate performance is key if we are to assess how a primate might respond when navigating new and changing environments. Given the connection between a mammal's ability to thermoregulate...

Mills, P. C., Ghodasara, P., Satake, N. et al. 2020. A novel transdermal ketoprofen formulation provides effective analgesia to calves undergoing amputation dehorning. Animals 10(12), 2442.

There is a critical need to ensure that all cattle undergoing surgical husbandry procedures are provided effective pain relief. Non-steroidal anti-inflammatory drugs (NSAIDs) are most commonly used, and typically are administered by intramuscular (IM) injection...

Elmi, A., Galligioni, V., Govoni, N. et al. 2020. Quantification of hair corticosterone, DHEA and testosterone as a potential tool for welfare assessment in male laboratory mice. Animals 10(12), 2408.

Steroids, providing information regarding several biological patterns including stress and sexual behavior, have been investigated in different matrices in laboratory mice. Data regarding hair quantification, indicative of longer timespans when compared to blood and saliva...

Saville, J. W., Ross, J. A., Trefz, T. et al. 2020. Development and field validation of lidocaine-loaded castration bands for bovine pain mitigation. Animals 10(12), 2363.

Castration is among the most common management procedures performed in the dairy and beef cattle industries and is mainly performed by surgery or elastic banding. Despite the various benefits of castration, all methods produce pain...

Kloefkorn H, Aiani, L. M., Lakhani, A. et al. 2020. Noninvasive three-state sleep-wake staging in mice using electric field sensors. Journal of Neuroscience Methods 344, 108834.

Study Objective: Validate a novel method for sleep-wake staging in mice using noninvasive electric field (EF) sensors. Methods: Mice were implanted with electroencephalogram (EEG) and electromyogram (EMG) electrodes and housed individually. Noninvasive EF sensors were...

Van der Saag, D., Lomax, S., Windsor, P. A. et al. 2019. Effect of lignocaine and a topical vapocoolant spray on pain response during surgical castration of beef calves. Animals 9(4), 126.

This study assessed the efficacy of pre-operative injected lignocaine and peri-operative topical vapocoolant spray, administered as most practical for incorporation into routine calf castration procedures. Calves were randomly allocated to: (1) sham castration (SHAM); (2)...

Barreiro-Vázquez, J. D., Miranda, M., Barreiro-Vilanova, M. I. et al. 2019. Characterization of the normal portal and hepatic blood flow of adult Holstein-Friesian cows. Animals 9(6), 386.

Knowledge of physiological portal and hepatic blood flow in cattle is essential for the use of Doppler ultrasound for diagnostic purposes. In this paper, we describe a protocol for the systematic ultrasonography evaluation of the...

Lowe, G., Sutherland, M., Waas, J. et al. 2019. Infrared thermography—A non-invasive method of measuring respiration rate in calves. Animals 9(8), 535.

Respiration rate (RR) is commonly used to assess states of cattle health and welfare such as pain, stress and disease. Traditionally, RR is measured by counting flank movements, a method often considered to be labour-intensive...

Lutz, J., Burla, J.-B., Gygax, L. et al. 2019. Horned and dehorned dairy cows differ in the pattern of agonistic interactions investigated under different space allowances. Applied Animal Behaviour Science 218, 104819.

Limited space in dairy cattle farming is associated with frequent encounters between cows, often resulting in agonistic interactions and injuries, especially in horned cows. Previous studies with dairy cows investigated space allowances in the waiting...

Ede, T., von Keyserlingk, M. A. G., Weary, D. M. 2019. Assessing the affective component of pain, and the efficacy of pain control, using conditioned place aversion in calves. Biology Letters 15(10), 20190642.

Pain in animals is typically assessed using reflexive and physiological responses. These measures allow inferences regarding nociception but provide little basis for conclusions about the affective component of pain (i.e. how negatively the experience is...

Marti, S., Meléndez, D. M., Pajor, E. A. et al. 2019. Effect of a single dose of subcutaneous meloxicam before knife castration alone or combined with hot-iron branding on scrotal healing, inflammatory response, and behaviour in 2-mo-old beef calves over 42 d post procedure. Canadian Journal of Animal Science 99(1), 179-190.

The objective of this study was to evaluate the effect of a single subcutaneous injection of meloxicam on scrotal healing, inflammatory response, and behaviour in castrated or castrated and branded beef calves for 42 d...

McKenzie, D. J., Sadoul, B., Geffroy, B. 2019. Measuring cortisol, the major stress hormone in fishes. Journal of Fish Biology 94(4), 540-555.

Stress in teleosts is an increasingly studied topic because of its interaction with growth, reproduction, immune system and ultimately fitness of the animal. Whether it is for evaluating welfare in aquaculture, adaptive capacities in fish...

Sutherland, M. A., Dowling, S. K., Schütz, K. E. et al. 2019. Behavioral and physiological assessment of liquid nitrogen cryoablation to prevent horn development in dairy calves. Journal of Veterinary Behavior 31, 74-81.

The aim of this series of studies was to evaluate the behavioral and physiological responses (experiment 1), the electroencephalographic response (experiment 2), and the efficacy (experiment 3) of cryoablation to determine if it could provide...

Casoni, D., Mirra, A., Suter, M. R. et al. 2019. Can disbudding of calves (one versus four weeks of age) induce chronic pain? Physiology & Behavior 199, 47-55.

Calf disbudding is a welfare-relevant invasive husbandry procedure. While it is widely recognized that disbudding elicits acute pain, its chronic consequences are currently unknown. Primary aim of this study was to investigate whether disbudding leads...

Franco, N. H., Gerós, A., Oliveira, L. et al. 2019. ThermoLabAnimal – A high-throughput analysis software for non-invasive thermal assessment of laboratory mice. Physiology & Behavior, 207, 113-121.

Body temperature changes in laboratory mice are often assessed by invasive and stressful methods, which may confound the measurement. Infrared thermography is a possible non-invasive alternative, but the cost of standard thermal cameras, lack of...

Redaelli, V., Papa, S., Marsella, G. et al. 2019. A refinement approach in a mouse model of rehabilitation research. Analgesia strategy, reduction approach and infrared thermography in spinal cord injury. PLOS ONE 14(10), e0224337.

The principles of Refinement, Replacement and Reduction (3R’s) should be taken into account when animals must be used for scientific purpose. Here, a Reduction / Refinement approach was applied to the procedure of spinal cord...

Green, A., Clark, C., Favaro, L. et al. 2019. Vocal individuality of Holstein-Friesian cattle is maintained across putatively positive and negative farming contexts. Scientific Reports 9, 18468.

Cattle mother-offspring contact calls encode individual-identity information; however, it is unknown whether cattle are able to maintain individuality when vocalising to familiar conspecifics over other positively and negatively valenced farming contexts. Accordingly, we recorded 333...

Jorquera-Chavez, M., Fuentes, S., Dunshea, F. et al. 2019. Modelling and validation of computer vision techniques to assess heart rate, eye temperature, ear-base temperature and respiration rate in cattle. Animals 9(12), 1089.

Precision livestock farming has emerged with the aim of providing detailed information to detect and reduce problems related to animal management. This study aimed to develop and validate computer vision techniques to track required features...

Rowland, N. E., Toth, L. A. 2019. Analytic and interpretational pitfalls to measuring fecal corticosterone metabolites in laboratory rats and mice. Comparative Medicine 69(5), 337–349.

Minimization and alleviation of stress are generally viewed as desirable aspects of laboratory animal management and use. However, achieving that goal requires an unambiguous and valid measure of stress. Glucocorticoid concentrations are commonly used as...