Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Fehrenbach, L. A., Adekanye, A. A., Palillo, M. B. et al. 2022. Internal temperatures of packaging for overnight cross-country shipping of zebrafish (Danio rerio). Comparative Medicine 72(3), 195-203.

As the use of zebrafish (Danio rerio) as a research model continues to rise, so too will the shipping and sharing of zebrafish strains across collaborating institutions. If done incorrectly, shipping can result in significant...

Barkus, C., Bergmann, C., Branco, T. et al. 2022. Refinements to rodent head fixation and fluid/food control for neuroscience. Journal of Neuroscience Methods 381, 109705.

The use of head fixation in mice is increasingly common in research, its use having initially been restricted to the field of sensory neuroscience. Head restraint has often been combined with fluid control, rather than...

Schoiswohl, J., Stanitznig, A., Smetanig, C. et al. 2022. Comparison of alternative methods for thermal disbudding in calves. Journal of Veterinary Behavior 51, 35-42.

Calves are frequently disbudded to reduce the number of injuries due to horns to other animals and farm workers. The most commonly used method is thermal disbudding which is increasingly causing animal welfare concerns (Stafford...

Bučková, K., Moravcsíková, Á., Šárová, R. et al. 2022. Indication of social buffering in disbudded calves. Scientific Reports 12(1), 13348.

Most dairy calves are housed individually in early ontogeny but social housing has positive effects on calf welfare including an advantage of social buffering, i.e., when negative effects of stress are mitigated through social support...

Novak, J., Jaric, I., Rosso, M. et al. 2022. Handling method affects measures of anxiety, but not chronic stress in mice. Scientific Reports 12(1), 20938.

Studies in mice have shown that less aversive handling methods (e.g. tunnel or cup handling) can reduce behavioural measures of anxiety in comparison to picking mice up by their tail. Despite such evidence, tail handling...

Assenmacher, C.-A., Lanza, M., Tarrant, J. C. et al. 2022. Post mortem study on the effects of routine handling and manipulation of laboratory mice. Animals 12(23), 3234.

Routine handling and manipulation of laboratory mice are integral components of most preclinical studies. Any type of handling and manipulation may cause stress and result in physical harm to mice, potentially leading to unintended consequences...

Curtis, A. K., Jones, D. E., Kleinhenz, M. et al. 2022. Delivering an immunocastration vaccine via a novel subcutaneous implant. Animals 12(19), 2698.
Fink, L. B., Mukobi, A., Gruber, L. et al. 2022. Longitudinal analysis of variability in fecal glucocorticoid metabolite concentrations in three orangutans (Pongo pygmaeus pygmaeus and Pongo pygmaeus abelii) before, during, and after transition from a regular habitat environment to temporary housing in indoor holding facilities. Animals 12(23), 3303.

Considerable research has been conducted on the effects of inter-institutional transfers, but far less consideration has been given to intra-institutional transfers and extended housing in off-habitat holding. On 15 May 2018, The Oregon Zoo’s orangutans...

Riva, M. G., Sobrero, L., Menchetti, L. et al. 2022. Unhandled horses classified with broken/unbroken test (BUT) exhibit longer avoidance, flight reactions, and displacement behaviors when approached by humans. Frontiers in Veterinary Science 9, 1022255.

Horses with a low level of tameness are at higher risk for transport-related disease and injury; hence, European regulations for the protection of animals during transport (EC 1/2005) are stricter for unhandled (unbroken) horses. However...

Brough, D. W., Murkin, J. T., Amos, H. E. et al. 2022. Comparing variability in measurement of subcutaneous tumors in mice using 3D thermal imaging and calipers. Comparative Medicine 72(6), 364–375.

Repeatable tumor measurements are key to accurately assessing tumor growth and treatment efficacy. A preliminary study that we conducted showed that a novel 3D and thermal imaging system (3D-TI) for measuring subcutaneous tumors in rodents...

Suba-Bokodi, É., Nagy, I., Molnár, M. 2022. Changes in the stress tolerance of dwarf rabbits in animal-assisted interventions. Applied Sciences 12(14), 6979.

Background: Rabbits are common companion animals in many European countries. Rabbit-assisted interventions in primary schools are suitable for decreasing the anxiety levels of children, which may increase the education efficiency of teachers. Methods: In our...

Aigueperse, N., Vasseur, E. 2021. Providing an outdoor exercise area affects tie-stall cow reactivity and human-cow relations. Frontiers in Veterinary Science 7, 1172.

Confinement and restriction of movement are a reality for most dairy cows. Providing outdoor access is one method to increase movement opportunities. However, leading cows to an outdoor exercise area increases their exposure to manipulations...

Powell, A. 2021. Rubber net mesh reduces scale loss during routine handling of farmed Atlantic salmon (Salmo salar). Animal Welfare 30(1), 19-24.

Atlantic salmon (Salmo salar) are an economically and ecologically important fish species that interact with humans during farming, fishing and research operations. Routine handling in nets exposes fish to mesh and causes scale loss. To...

Ramos, J., Balasch, J. C., Tort, L. 2021. About welfare and stress in the early stages of fish. Frontiers in Veterinary Science 8, 634434.

In conclusion, the investigations carried out up to now demonstrate that during the early stages fish show high sensitivity to many types of stressors involving an array of responses to overcome alterations that could affect...

Thomsen, P. T., Hansen, J. H., Herskin, M. S. 2021. Dairy calves show behavioural responses to hot iron disbudding after local anaesthesia with procaine. Veterinary Record 188(4), 270-276.

Background: The efficacy of procaine as anaesthetic for disbudding of calves is largely unknown. Likewise, information about effect of interval from local anaesthesia to disbudding and the size of the hot iron used is missing...

Yamada, P. H., Codognoto, V. M., Rydygier de Ruediger, F. et al. 2021. Pain assessment based on facial expression of bulls during castration. Applied Animal Behaviour Science 236, 105258.

Bovine castration can be performed surgically, chemically, or immunologically and the method used can influence animal welfare. The use of facial expressions is an efficient tool to quantify pain, but there has been limited study...

Sørensen, D., Cloutier, S., Gaskill, B. (Eds.). 2021. Animal-centric Care and Management - Enhancing Refinement in Biomedical Research. CRC Press, Boca Raton, FL.

The concept of the 3Rs (Refinement, Reduction and Replacement) has been used as a framework for improving the welfare of laboratory animals for the last half century. By establishing an animal-centric view on housing and...

Stevens, C., Hawkins, P., Smulders, T. V. et al. 2021. Report of the 2020 RSPCA/UFAW rodent and rabbit welfare meeting. Animal Technology and Welfare 20(1), 21-33.

The RSPCA/UFAW rodent and rabbit welfare group has held a one-day meeting every autumn for the last 27 years, so that its members can discuss current welfare research, exchange views on welfare issues and share...

Sheil, M., Chambers, M., Polkinghorne, A. et al. 2021. Topical application of lidocaine and bupivacaine to disbudding wounds in dairy calves: Safety, toxicology and wound healing. Animals 11(3), 869.

Tri-Solfen® is a combination topical anaesthetic and antiseptic solution containing lidocaine, bupivacaine, adrenaline and cetrimide. Applied to wounds, it is reported to reduce the pain experienced by calves following thermocautery disbudding. While lidocaine and bupivacaine...

Juffinger, A., Schoiswohl, J., Stanitznig, A. et al. 2021. Mechanical nociceptive threshold, tissue alterations and horn growth in calves after injection of isoeugenol or clove oil under the horn bud. Animals 11(3), 828.

Disbudding of calves is a common, painful intervention. Due to cytotoxic and anesthetic properties, the injection of clove oil or its component isoeugenol may be less detrimental to animal welfare. We investigated mechanical nociceptive threshold...

Tschoner, T. 2021. Methods for pain assessment in calves and their use for the evaluation of pain during different procedures—A review. Animals 11(5), 1235.

The evaluation and assessment of the level of pain calves are experiencing is important, as the experience of pain (e.g., due to routine husbandry procedures) severely affects the welfare of calves. Studies about the recognition...

Bergamasco, L., Edwards-Callaway, L. N., Bello, N. M. et al. 2021. Unmitigated surgical castration in calves of different ages: Electroencephalographic and neurohormonal findings. Animals 11(6), 1791.

Castration is a common management procedure employed in North American cattle production and is known to cause a pain response. The present study was designed to investigate the effect of unmitigated surgical castration on the...

Steagall, P. V., Bustamante, H., Johnson, C. B. et al. 2021. Pain management in farm animals: Focus on cattle, sheep and pigs. Animals 11(6), 1483.

Pain causes behavioral, autonomic, and neuroendocrine changes and is a common cause of animal welfare compromise in farm animals. Current societal and ethical concerns demand better agricultural practices and improved welfare for food animals. These...

Labitt, R. N., Oxford, E. M., Davis, A. K. et al. 2021. A validated smartphone-based electrocardiogram reveals severe bradyarrhythmias during immobilizing restraint in mice of both sexes and four strains. JAALAS 60(2), 201-212.

Mouse handling and restraint affect behavior, physiology, and animal welfare, yet little information is available on how various mouse restraint methods affect cardiovascular parameters. We validated the use of a smartphone-based ECG sys- tem in...

Ellis, T., Katsiadaki, I. 2021. Clarification of early end-points for refinement of animal experiments, with specific reference to fish. Laboratory Animals 55(3), 244-253.

Appropriate end-points are integral to the refinement of laboratory animal experiments. Our recent experience has highlighted that ambiguity around end-points is hampering their adoption in experiments that cause severe suffering to fish. In toxicology, the...