Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Golledge, H., Richardson, C. (Eds.) 2024. The UFAW Handbook on the Care and Management of Laboratory and Other Research Animals (9th ed.). Wiley-Blackwell. 1040 p.

The latest edition of the seminal reference on the care and management of laboratory and research animals. The newly revised ninth edition of The UFAW Handbook on the Care and Management of Laboratory and Other...

Kitchenham, L., MacLellan, A., Paletta, P. et al. 2024. Do housing-induced changes in brain activity cause stereotypic behaviours in laboratory mice? Behavioural Brain Research 462, 114862.

Abnormal repetitive stereotypic behaviours (SBs) (e.g. pacing, body-rocking) are common in animals with poor welfare (e.g. socially isolated/in barren housing). But how (or even whether) poor housing alters animals’ brains to induce SBs remains uncertain...

Ausderau, K. K., Colman, R. J., Kabakov, S. et al. 2023. Evaluating depression- and anxiety-like behaviors in non-human primates. Frontiers in Behavioral Neuroscience 16, 1006065.

Depression and anxiety are some of the most prevalent and debilitating mental health conditions in humans. They can present on their own or as co-morbidities with other disorders. Like humans, non-human primates (NHPs) can develop...

Bozzay, J. D., Walker, P. F., Atwood, R. E. et al. 2023. Development, refinement, and characterization of a nonhuman primate critical care environment. PLOS ONE 18(3), e0281548.

Systemic inflammatory response remains a poorly understood cause of morbidity and mortality after traumatic injury. Recent nonhuman primate (NHP) trauma models have been used to characterize the systemic response to trauma, but none have incorporated...

Alejandro, J., Yamanashi, Y., Nemoto, K. et al. 2023. Reducing stress and stereotypic behaviors in captive female pygmy slow lorises (Nycticebus pygmeaus). American Journal of Primatology 85(7), e23495.

Improving captive conditions of pygmy slow lorises (Nekaris and Nijman have recently suggested that the pygmy slow loris should be called the pygmy loris and is distinctive enough to warrant a new genus, Xanthonycticebu) (Nycticebus...

Attokaren, M. K., Jeong, N., Blanpain, L. et al. 2023. BrainWAVE: A flexible method for noninvasive stimulation of brain rhythms across species. ENeuro 10(2) ENEURO.0257-22.2022.

Rhythmic neural activity, which coordinates brain regions and neurons to achieve multiple brain functions, is impaired in many diseases. Despite the therapeutic potential of driving brain rhythms, methods to noninvasively target deep brain regions are...

Shanazz, K., Nalloor, R., Vazdarjanova, A. 2023. A mild stressor induces short-term anxiety and long-term phenotypic changes in trauma-related behavior in female rats. Frontiers in Behavioral Neuroscience 17.

IntroductionAnxiety and anxiety-influenced disorders are sexually dimorphic with women being disproportionately affected compared to men. Given the increased prevalence in women and the documented differences in anxiety and trauma behavior between male and female rats...

Sharma, S., Khanal, L., Shrestha, S. et al. 2023. Zoo visitors as a source of enrichment to reduce abnormal behavior in captive rhesus macaques (Macaca mulatta) in the Central Zoo, Kathmandu, Nepal. Journal of Animal Behaviour Biometeorology 11(1), e2023005.

Overexpression of abnormal behavior among captive primates indicates poor management practices. The type, frequency, and contributing factors of abnormal behaviors vary highly across individual animals in captive settings. This study explored if sex, rearing history...

Goldsborough, Z., Sterck, E. H. M., de Waal, F. B. M. et al. 2022. Individual variation in chimpanzee (Pan troglodytes) repertoires of abnormal behaviour. Animal Welfare 31(1), 125-135.

Abnormal behaviour in captive animals is both pervasive and ambiguous. Although individual differences are central to the field of animal welfare, studies on abnormal behaviour predominantly employ quantitative, population-level approaches. For example, whereas previous studies...

Habenicht, L. M., Staley, A. W., Clancy, B. M. et al. 2022. Characterization of a jumping stereotypy in gerbils (Meriones unguiculatus) and assessment of opaque tubing enrichment on stereotypies and breeding. JAALAS 61(2), 149-158.

Mongolian gerbils can develop stereotypic behaviors, including corner digging. At our institution, gerbils also engage in repetitive corner jumping, which we sought to characterize as a potentially novel stereotypy in gerbils. We then attempted to...

Buckmaster, C. L., Levesque, D., LaFollette, M. et al. 2022. Five hot topics in refinement of nonhuman primate neuroscience research. Laboratory Animal Science Professional 10(1) (January/February), 24-26.

Members of the North American 3Rs Collaborative (NA3RsC) refinement initiative have chosen to summarize developments in five hot topics of interest: 1. Tips for welfare-friendly transport, chairing, and restraint; 2. Guidance on refining food and...

Hirata, S. 2022. Sky after 30 years: A brief biography of three biomedical research chimpanzees in Japan. Primates 63(2), 105–108.

This article describes the strategies employed by Kumamoto Sanctuary in Japan to integrate 3 retired chimpanzees – who each spent 30 years singly housed in a biomedical facility – with the sanctuary’s other residents.

Lutz, C. K., Coleman, K., Hopper, L.M. et al. 2022. Nonhuman primate abnormal behavior: Etiology, assessment, and treatment. American Journal of Primatology 84(6), e23380.

Across captive settings, nonhuman primates may develop an array of abnormal behaviors including stereotypic and self-injurious behavior. Abnormal behavior can indicate a state of poor welfare, since it is often associated with a suboptimal environment...

Franklin, A. N., Martin, A. L., Perlman, Siti Norsyuhada Kamaluddin et al. 2022. Functional analysis and successful treatment of a captive rhesus macaque’s disruptive behavior. Journal of Applied Animal Welfare Science 25(3), 287-296.

Functional analysis (FA) is a method developed and used by behavior analysts in human clinical settings to identify possible environmental variables that reinforce undesired behavior. FA is increasingly being applied to better understand the behavior...

Bissmire, H. 2022. Green clay: Not just for a pretty face. Animal Technology and Welfare 21(3), 242–243.

Mice can be prone to skin lesions for various reasons. Green clay is a non-invvasive method to treat such skin lesions, and does not require veterinary approval or have properties that may interfere with an...

Kulyar, M. F.-A., Ashfaq, K., Aqib, A. I. et al. 2022. Enhanced healing activity of manuka honey and nitrofurazone composite in full-thickness burn wounds in the rabbit model. Frontiers in Veterinary Science 9, 875629.

Burns cause many significant changes in metabolism and inflammatory reactions, leading to poor regeneration in animals and humans. A list of medicines to treat burns is available in the market. But due to the high...

Müller, K., Lengheimer, T., Kral-Pointner, J. B. et al. 2022. Exposure to soiled bedding reduces abnormal repetitive behaviors in mice. Frontiers in Behavioral Neuroscience 16, 1062864.

Hygiene management protocols in laboratory mouse husbandries worldwide most commonly employ soiled bedding-exposed sentinel mice to monitor the occurrence of infections in mouse colonies. Using this approach, sentinel mice repeatedly receive a mixture of used...

Nuber, M., Gonzalez-Uarquin, F., Neufurth, M. et al. 2022. Development of a 3D simulator for training the mouse in utero electroporation. PLOS ONE 17(12), e0279004.

In utero electroporation (IUE) requires high-level training in microinjection through the mouse uterine wall into the lateral ventricle of the mouse brain. Training for IUE is currently being performed in live mice as no artificial...

Brough, D. W., Murkin, J. T., Amos, H. E. et al. 2022. Comparing variability in measurement of subcutaneous tumors in mice using 3D thermal imaging and calipers. Comparative Medicine 72(6), 364–375.

Repeatable tumor measurements are key to accurately assessing tumor growth and treatment efficacy. A preliminary study that we conducted showed that a novel 3D and thermal imaging system (3D-TI) for measuring subcutaneous tumors in rodents...

Zeng, Y., Jin, H., Wang, J. et al. 2022. An optimized method for intratracheal instillation in mice. Journal of Pharmacological and Toxicological Methods 118, 107230.

Non-invasive intratracheal instillation is an important method for direct exposure of the respiratory tract which is commonly used in toxicology, environmental science, and other research fields. However, there is no standard operating process for non-invasive...

Hatcher, N. 2022. The effects of enrichment on an abnormal behaviour in naked mole rats (Heterocephalus glaber) at Tilgate Nature Centre. RATEL (Journal of the Association of British and Irish Wild Animal Keepers) 49(4), 15-18.

The naked mole rat (Heterocephalus glaber) is a relatively rare mammal in zoological collections with only nine zoos in the United Kingdom holding colonies of varying sizes at the time of study. This study aims...

Novak, M. A. 2021. Self-injurious behavior in rhesus macaques: Issues and challenges. American Journal of Primatology 83(6), e23222.

Some monkeys housed in research facilities develop abnormal behavior ranging from stereotypic to the more serious condition of self-injurious behavior (SIB). We initially sought to understand how and why monkeys engaged in SIB and more...

Sørensen, D., Cloutier, S., Gaskill, B. (Eds.). 2021. Animal-centric Care and Management - Enhancing Refinement in Biomedical Research. CRC Press, Boca Raton, FL.

The concept of the 3Rs (Refinement, Reduction and Replacement) has been used as a framework for improving the welfare of laboratory animals for the last half century. By establishing an animal-centric view on housing and...

Polanco, A., McCowan, B., Niel, L. et al. 2021. Recommendations for abnormal behaviour ethograms in monkey research. Animals 11(5), 1461.

Laboratory monkey ethograms currently include subcategories of abnormal behaviours that are based on superficial morphological similarity. Yet, such ethograms may be misclassifying behaviour, with potential welfare implications as different abnormal behaviours are likely to have...

Spiezio C., Vaglio, S., Vandelle C. et al. 2021. Effects of rearing on the behaviour of zoo-housed chimpanzees (Pan troglodytes). Folia Primatologica 92(2), 91–102.

Early-life experiences may considerably affect the behavioural patterns of adult primates. Particularly, atypical rearing practices might lead to abnormal behaviours and social-sexual deficiencies in captive, adult non-human primates. We conducted behavioural observations of mother-reared (n...