Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Wilson, C., Hall, N., Aviles-Rosa, E. O. et al. 2023. The effect of repeated testing on judgement bias in domestic dogs (Canis familiaris). Animal Cognition 26(2), 477–489.

Judgement bias paradigms are increasingly being used as a measure of affective state in dogs. Approach to an ambiguous stimulus is commonly used as a measure of affect, however, this may also be influenced by...

Brake, M. E., Russ, B. P., Gansebom, S. et al. 2023. Effects of extended-release buprenorphine on mouse models of influenza. Comparative Medicine 73(6), 466–473.

Mice are widely used as small animal models for influenza infection and immunization studies because of their susceptibility to many strains of influenza, obvious clinical signs of infection, and ease of handling. Analgesia is rarely...

Caires, C. R. S., Bossolani-Martins, A. L. 2023. Which form of environmental enrichment is most effective in rodent models of autism? Behavioural Processes 211, 104915.

Environmental enrichment (EE) is known to produce experience-dependent changes in the brains and behaviors of rodents, and it has therefore been widely used to study neurodevelopmental disorders, including autism. Current studies show significant protocol variation...

Ferguson, L. T., Rashied, A. A., Liang, Z. et al. 2023. A novel scoring system for humane endpoints in mice with cecal ligation and puncture-induced sepsis. Comparative Medicine 73(6), 446–460.

Animal-based research is essential to the study of sepsis pathophysiology, diagnostics, and therapeutics. However, animal models of sepsis are often associated with high mortality because of the difficulty in predicting imminent death based on premortem...

Lopez-Echeverria, G., Alamaw, E., Gorman, G. et al. 2023. Comparing three formulations of buprenorphine in an incisional pain model in mice. JAALAS 62(6), 531–537.

This study compared the therapeutic effects in mice of 3 different formulations of buprenorphine. These formulations were standard buprenorphine hydrochloride (Bup-HCL) and 2 different extended-release buprenorphine formulations (Bup-ER and Ethiqa-XR [Bup-XR]). Drugs were evaluated based...

Mercier, P., Honeckman, L., Jokela, F. et al. 2023. Using standardized scales to assess fear at veterinary visits: Intra- and inter-rater reliability. Journal of Veterinary Behavior 62, 12–17.

Behavioral, emotional, and physical signs of distress are increasingly recognized in veterinary patients during routine care. Fear and distress are humane and welfare concerns themselves, but such behavior may also result in deferred veterinary care...

Uskenov, R., Mirmanov, A., Tretyakov, I. et al. 2023. Automatic cattle weighing on pastures with behavioral analysis during drinking. Journal of Animal Behaviour Biometeorology 11(3), e2023020.

Livestock body weight (BW) and average daily weight gain (ADG) are primary indicators of beef cattle productivity. The conventional method of weighing involves moving the cattle to a weighing location, which is labor-intensive, stressful for...

Mainau, E., Llonch, P., Temple, D. et al. 2022. Alteration in activity patterns of cows as a result of pain due to health conditions. Animals 12(2), 176.

The main conditions and diseases considered painful in dairy cows are mastitis, lameness, calving (including dystocia and caesarean section) and metritis. The cattle literature reports that deviation from normal daily activity patterns (both increased and/or...

Rowe, E., Mullan, S. 2022. Advancing a “good life” for farm animals: Development of resource tier frameworks for on-farm assessment of positive welfare for beef cattle, broiler chicken and pigs. Animals 12(5), 565.

There is increasing recognition that farm animal welfare standards should ensure positive welfare, as well as prevent negative welfare. Resources that are valued by an animal and that provide opportunities to engage in motivated behaviours...

Hopper, L. M., Lake, B. R., Leinwand, J. G. et al. 2022. Assessing chimpanzees’ fluency of movement: Applications for monitoring health and welfare. Applied Animal Behaviour Science 250, 105612.

With age, primates’ activity levels and ease of movement may decline and changes in locomotory behaviour may reflect changes in health. Thus, developing quick and reliable measures of movement has important applications for measuring recovery...

Buckmaster, C. L., Levesque, D., LaFollette, M. et al. 2022. Five hot topics in refinement of nonhuman primate neuroscience research. Laboratory Animal Science Professional 10(1) (January/February), 24-26.

Members of the North American 3Rs Collaborative (NA3RsC) refinement initiative have chosen to summarize developments in five hot topics of interest: 1. Tips for welfare-friendly transport, chairing, and restraint; 2. Guidance on refining food and...

Hirata, S. 2022. Sky after 30 years: A brief biography of three biomedical research chimpanzees in Japan. Primates 63(2), 105–108.

This article describes the strategies employed by Kumamoto Sanctuary in Japan to integrate 3 retired chimpanzees – who each spent 30 years singly housed in a biomedical facility – with the sanctuary’s other residents.

Guillaumin, A., Vlcek, B., Wallén-Mackenzie, Å. 2022. Improving well-being and survival in the 6-OHDA lesion model of Parkinson´s disease in mice: Literature review and step-by-step protocol. Scandinavian Journal of Animal Science 48(1), 1-21.

Parkinson’s disease (PD) is the most common neurodegenerative motor disorder and primarily affects movement control but also a range of non-motor functions. With unknown etiology and lack of cure, much research is dedicated to unravel...

Reuser, A., Wenzel, K., Felix, S. B. et al. 2022. Simultaneous assessment of spontaneous cage activity and voluntary wheel running in group-housed mice. Scientific Reports 12(1), 4444.

Small animal models are frequently used to improve our understanding of the molecular and biological signaling pathways underlying the beneficial effects of physical activity and exercise. Unfortunately, when running wheels are employed, mice and rats...

Knaebe, B., Weiss, C. C., Zimmermann, J. et al. 2022. The promise of behavioral tracking systems for advancing primate animal welfare. Animals 12(13), 1648.

Recent years have witnessed major advances in the ability of computerized systems to track the positions of animals as they move through large and unconstrained environments. These systems have so far been a great boon...

Paterson, E. A., Turner, P. V. 2022. Challenges with assessing and treating pain in research primates: A focused survey and literature review. Animals 12(17), 2304.

Research primates may undergo surgical procedures making effective pain management essential to ensure good animal welfare and unbiased scientific data. Adequate pain mitigation is dependent on whether veterinarians, technicians, researchers, and caregivers can recognize and...

Thomas, A. D., Orsel, K., Cortés, J. A. et al. 2022. Objective determination and quantification of pain and inflammation associated with digital dermatitis in feedlot cattle. Applied Animal Behaviour Science 253, 105684.

Digital dermatitis (DD) is an infectious skin disease in cattle that causes pain and discomfort, significantly impacting animal welfare. Although DD lesions are painful and prone to bleeding when touched, pain resulting from DD has...

Bethell, E. J., Khan, W., Hussain, A. 2022. A deep transfer learning model for head pose estimation in rhesus macaques during cognitive tasks: Towards a nonrestraint noninvasive 3Rs approach. Applied Animal Behaviour Science 255, 105708.

Head orientation is a measure of attention used in behavioral psychological research with non-human primates. It is used across a broad range of disciplines and settings, from the field to the laboratory. Field methods are...

Mocho, J.-P., Collymore, C., Farmer, S. C. et al. 2022. FELASA-AALAS recommendations for monitoring and reporting of laboratory fish diseases and health status, with an emphasis on zebrafish (Danio rerio). Comparative Medicine 72(3), 127-148.

The exchange of fish for research may expose an aquatic laboratory to pathogen contamination as incoming fish can introduce bacteria, fungi, parasites, and viruses capable of affecting both experimental results and fish and personnel health...

Fehrenbach, L. A., Adekanye, A. A., Palillo, M. B. et al. 2022. Internal temperatures of packaging for overnight cross-country shipping of zebrafish (Danio rerio). Comparative Medicine 72(3), 195-203.

As the use of zebrafish (Danio rerio) as a research model continues to rise, so too will the shipping and sharing of zebrafish strains across collaborating institutions. If done incorrectly, shipping can result in significant...

Kohler, J., Mei, J., Banneke, S. et al. 2022. Assessing spatial learning and memory in mice: Classic radial maze versus a new animal-friendly automated radial maze allowing free access and not requiring food deprivation. Frontiers in Behavioral Neuroscience 16, 1013624.

The radial arm maze (RAM) is a common behavioral test to quantify spatial learning and memory in rodents. Prior attempts to refine the standard experimental setup have been insufficient. Previously, we demonstrated the feasibility of...

Malkani, R., Paramasivam, S., Wolfensohn, S. 2022. Preliminary validation of a novel tool to assess dog welfare: The Animal Welfare Assessment Grid. Frontiers in Veterinary Science 9, 940017.

Animal welfare monitoring is a vital part of veterinary medicine and can be challenging due to a range of factors that contribute to the perception of welfare. Tools can be used, however; there are few...

Barkus, C., Bergmann, C., Branco, T. et al. 2022. Refinements to rodent head fixation and fluid/food control for neuroscience. Journal of Neuroscience Methods 381, 109705.

The use of head fixation in mice is increasingly common in research, its use having initially been restricted to the field of sensory neuroscience. Head restraint has often been combined with fluid control, rather than...

Martin-Flores, M., Sakai, D. M., Marra Muto, R. et al. 2022. A flexible endotracheal tube introducer improves first-attempt success of intubation in cats by novice anesthetists. Journal of the American Veterinary Medical Association 260(11), 1316-1323.

OBJECTIVE: To test whether the use of a flexible endotracheal tube introducer (ETI) facilitates intubation of cats by veterinary students with little or no experience. ANIMALS: 125 healthy cats. PROCEDURES: Cats were sedated with dexmedetomidine...

Schnaider, M. A., Heidemann, M. S., Pescatori Silva, A. H. et al. 2022. Vocalization and other behaviors indicating pain in beef calves during the ear tagging procedure. Journal of Veterinary Behavior 47, 93-98.

Vocalization and other behavior signals are used as tools to assess animal welfare in beef calves. This paper aimed to compare vocal parameters and behavior signals expressed by beef calves submitted either to ear tagging...