Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Narshi, T. M., Free, D., Justice, W. S. M. et al. 2022. Welfare assessment of invertebrates: Adapting the animal welfare assessment grid (AWAG) for zoo decapods and cephalopods. Animals 12(13), 1675.

Consumer demand for invertebrates is on the rise as their numbers in the wild dwindle. However, with the growing conservation efforts of modern zoos and aquariums, and evidence from over 300 studies showing that invertebrates...

Knaebe, B., Weiss, C. C., Zimmermann, J. et al. 2022. The promise of behavioral tracking systems for advancing primate animal welfare. Animals 12(13), 1648.

Recent years have witnessed major advances in the ability of computerized systems to track the positions of animals as they move through large and unconstrained environments. These systems have so far been a great boon...

Paterson, E. A., Turner, P. V. 2022. Challenges with assessing and treating pain in research primates: A focused survey and literature review. Animals 12(17), 2304.

Research primates may undergo surgical procedures making effective pain management essential to ensure good animal welfare and unbiased scientific data. Adequate pain mitigation is dependent on whether veterinarians, technicians, researchers, and caregivers can recognize and...

Mocho, J.-P., Collymore, C., Farmer, S. C. et al. 2022. FELASA-AALAS recommendations for monitoring and reporting of laboratory fish diseases and health status, with an emphasis on zebrafish (Danio rerio). Comparative Medicine 72(3), 127-148.

The exchange of fish for research may expose an aquatic laboratory to pathogen contamination as incoming fish can introduce bacteria, fungi, parasites, and viruses capable of affecting both experimental results and fish and personnel health...

Malkani, R., Paramasivam, S., Wolfensohn, S. 2022. Preliminary validation of a novel tool to assess dog welfare: The Animal Welfare Assessment Grid. Frontiers in Veterinary Science 9, 940017.

Animal welfare monitoring is a vital part of veterinary medicine and can be challenging due to a range of factors that contribute to the perception of welfare. Tools can be used, however; there are few...

Jang, J. Y., Liang, T., Kim, M.-K. et al. 2022. A rapid and noninvasive method that extracts polymerase chain reaction-ready genomic DNA from adult zebrafish. Zebrafish 19(4), 160-164.

Genotyping usually entails analysis of the products of polymerase chain reaction (PCR) carried out with genomic DNA (gDNA) as template, and is employed for validation of mutant or transgenic organisms. For genotyping of adult zebrafish...

van der Laan, J. E., Vinke, C. M., Arndt, S. S. 2022. Evaluation of hair cortisol as an indicator of long-term stress responses in dogs in an animal shelter and after subsequent adoption. Scientific Reports 12(1), 5117.

Shelter dogs are exposed to a variety of stressors. Among non-invasive techniques, hair cortisol concentration (HCC) is suggested an easy to collect biomarker for giving insight into long-term stress responses. We evaluated HCC as an...

Reicher, V., Bálint, A., Újváry, D. et al.2022. Non-invasive sleep EEG measurement in hand raised wolves. Scientific Reports 12(1), 9792.

Sleep research greatly benefits from comparative studies to understand the underlying physiological and environmental factors affecting the different features of sleep, also informing us about the possible evolutionary changes shaping them. Recently, the domestic dog...

Lei, Y., Dong, P., Guan, Y. et al. 2022. Postural behavior recognition of captive nocturnal animals based on deep learning: A case study of Bengal slow loris. Scientific Reports 12(1), 7738.

The precise identification of postural behavior plays a crucial role in evaluation of animal welfare and captive management. Deep learning technology has been widely used in automatic behavior recognition of wild and domestic fauna species...

Hamlaoui, A., Keeling, L., Burman, O. et al. 2022. Investigating attentional scope as a novel indicator of emotional state in animals. Scientific Reports 12(1), 17452.

In humans, contrasting emotional states can lead to a broadening or narrowing of attentional scope. Whether this is also the case in animals has yet to be investigated. If confirmed, measurement of attentional scope has...

Böswald, L. F., Matzek, D., Mohr, H. et al. 2022. Morphometrics of Xenopus laevis kept as laboratory animals. Animals 12(21), 2986.

Morphometric data that provide information on body conditions can be used to monitor the health and well-being of animals. In laboratory animals, they can help to evaluate the stress due to experiments or treatments, following...

Hamlaoui, A., Keeling, L., Burman, O. et al. 2022. Investigating attentional scope as a novel indicator of emotional state in animals. Scientific Reports 12(1), 17452.

In humans, contrasting emotional states can lead to a broadening or narrowing of attentional scope. Whether this is also the case in animals has yet to be investigated. If confirmed, measurement of attentional scope has...

Malkani, R., Paramasivam, S., Wolfensohn, S. 2022. Preliminary validation of a novel tool to assess dog welfare: The Animal Welfare Assessment Grid. Frontiers in Veterinary Science 9, 940017.

Animal welfare monitoring is a vital part of veterinary medicine and can be challenging due to a range of factors that contribute to the perception of welfare. Tools can be used, however; there are few...

Mason, G. J., Lavery, J. M. 2022. What is it like to be a bass? Red herrings, fish pain and the study of animal sentience. Frontiers in Veterinary Science 9, 788289.

Debates around fishes’ ability to feel pain concern sentience: do reactions to tissue damage indicate evaluative consciousness (conscious affect), or mere nociception? Thanks to Braithwaite’s research leadership, and concerns that current practices could compromise welfare...

Meers, L. L., Contalbrigo, L., Samuels, W. E. et al. 2022. Canine-assisted interventions and the relevance of welfare assessments for human health, and transmission of zoonosis: A literature review. Frontiers in Veterinary Science 9, 899889.

CAIs (canine-assisted interventions) include “canine-assisted therapy” in which a therapist sets client-oriented goals, “canine-assisted activities” with recreational goals for clients, and “canine-assisted education/learning” in which teachers or coaches create learning goals for students or clients...

Ruge, L., Mancini, C. 2022. An ethics toolkit to support animal-centered research and design. Frontiers in Veterinary Science 9, 891493.

Designers and researchers who work with animals need to employ an array of ethical competencies to guarantee the welfare of animals taking part in animal-centered research. The emerging field of Animal-Computer Interaction (ACI), which deals...

Stubsjøen, S. M., Moe, R. O., Johannessen, C. et al. 2022. Can shelter dog observers score behavioural expressions consistently over time? Acta Veterinaria Scandinavica 64(1), 35.

A substantial number of dogs live in animal shelters worldwide. Stressors within the shelter environment can compromise their welfare, and scientific evaluations of feasible welfare assessment methods are therefore needed. Qualitative Behaviour Assessment (QBA) is...

Bremhorst, A., Mills, D. S., Würbel, H. et al. 2022. Evaluating the accuracy of facial expressions as emotion indicators across contexts in dogs. Animal Cognition 25(1), 121–136.

Facial expressions potentially serve as indicators of animal emotions if they are consistently present across situations that (likely) elicit the same emotional state. In a previous study, we used the Dog Facial Action Coding System...

Burani, C., Pelosi, A., Valsecchi, P. 2022. A promising novel judgement bias test to evaluate affective states in dogs (Canis familiaris). Animal Cognition 25(4), 837–852.

The judgement bias test represents one of the most applied tools to evaluate animals’ optimistic/pessimistic attitude and to infer their emotional and welfare state accordingly. The judgement bias test (JBT) has been used several times...

Navarro-Castilla, A., Garrido, M., Hawlena, H. et al. 2021. Non-invasive monitoring of adrenocortical activity in three sympatric desert gerbil species. Animals 11(1), 75.

The study of the endocrine status can be useful to understand wildlife responses to the changing environment. Here, we validated an enzyme immunoassay (EIA) to non-invasively monitor adrenocortical activity by measuring fecal corticosterone metabolites (FCM)...

Casey, K. M., Gore, F., Vilches-Moure, J. G. et al. 2021. Management of morbidity and mortality in a New Zealand white rabbit model of steroidinduced osteonecrosis of the femoral head. Comparative Medicine 71(1), 86-98.

Steroid-induced osteonecrosis of the femoral head (SONFH) is a condition documented in humans and animals exposed to chronic steroid administration. The rabbit has become a preferred animal model for investigating the pathogenesis and treatment of...

Marx, A., Lenkei, R., Pérez Fraga, P. et al. 2021. Occurrences of non-linear phenomena and vocal harshness in dog whines as indicators of stress and ageing. Scientific Reports 11(1), 4468.

During social interactions, acoustic parameters of tetrapods’ vocalisations reflect the emotional state of the caller. Higher levels of spectral noise and the occurrence of irregularities (non-linear phenomena NLP) might be negative arousal indicators in alarm...

Wells, D. L. 2021. Paw preference as a tool for assessing emotional functioning and welfare in dogs and cats: A review. Applied Animal Behaviour Science 236, 105148.

Dogs and cats have been extensively studied of late in relation to their paw preferences, with both species showing preferential motor bias at the level of the individual. Over the years, a wide range of...

Epstein, J., Dowling-Guyer, S., McCobb, E. et al. 2021. Addressing stress in dogs in shelters through a novel visual and auditory enrichment device. Applied Animal Behaviour Science 236, 105215.

Dogs experience both acute and chronic stress when living in animal shelters. Current best practices recommend a variety of techniques for reducing stress such as enhanced human interactions including play or training, novel feeding strategies...

Berlinghieri, F., Panizzon, P., Penry-Williams, I. L. et al. 2021. Laterality and fish welfare - A review. Applied Animal Behaviour Science 236, 105239.

Humans interact with fishes in many contexts including aquaculture, scientific study and companion animals. In all of these contexts, fish welfare can be compromised through anthropogenic means. Concern for fish welfare has grown considerably in...