Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Wood, L. 2022. Managing long-term wellness in captive sea turtles. Animal Welfare 31(4), 423–432.

Circumstances surrounding advances in stranding response and veterinary care have created a growing need for the long-term housing of captive sea turtles. However, the difficulty in recreating natural conditions in captive settings places a responsibility...

Brando, S., Coe, J. 2022. Confronting back-of-house traditions: Primates as a case study. Journal of Zoological and Botanical Gardens 3(3), 366–397.

This review commentary focuses on traditional management practices and facility design with suggested improvements in non-public primate management areas, often called “back-of-house”, (henceforth BOH) in zoos, sanctuaries, and research facilities. Progress has been made toward...

Bremhorst, A., Mills, D. S., Würbel, H. et al. 2022. Evaluating the accuracy of facial expressions as emotion indicators across contexts in dogs. Animal Cognition 25(1), 121–136.

Facial expressions potentially serve as indicators of animal emotions if they are consistently present across situations that (likely) elicit the same emotional state. In a previous study, we used the Dog Facial Action Coding System...

Burani, C., Pelosi, A., Valsecchi, P. 2022. A promising novel judgement bias test to evaluate affective states in dogs (Canis familiaris). Animal Cognition 25(4), 837–852.

The judgement bias test represents one of the most applied tools to evaluate animals’ optimistic/pessimistic attitude and to infer their emotional and welfare state accordingly. The judgement bias test (JBT) has been used several times...

Fieschi-Méric, L., Ellis, C., Servini, F. et al. 2022. An improvement in enclosure design can positively impact welfare, reduce aggressiveness and stabilise hierarchy in captive Galapagos giant tortoises. Journal of Zoological and Botanical Gardens 3(4), 499–512.

The interest in the welfare of zoo animals, from both the public and the scientific community, has long been biased towards mammals. However, growing evidence of the complex behavioural repertoires of less charismatic animals, such...

Marx, A., Lenkei, R., Pérez Fraga, P. et al. 2021. Occurrences of non-linear phenomena and vocal harshness in dog whines as indicators of stress and ageing. Scientific Reports 11(1), 4468.

During social interactions, acoustic parameters of tetrapods’ vocalisations reflect the emotional state of the caller. Higher levels of spectral noise and the occurrence of irregularities (non-linear phenomena NLP) might be negative arousal indicators in alarm...

Arena, I., Marliani, G., Sabioni, S. et al. 2021. Assessment of horses’ welfare: Behavioral, hormonal, and husbandry aspects. Journal of Veterinary Behavior 41, 82-90.

Horse practitioners have difficulties with undesirable behaviors exhibited by their horses (Equus caballus), such as cribbing, weaving, or head shaking. It has been suggested that most of behavioral disorders originate from the animals’ attempt to...

Wells, D. L. 2021. Paw preference as a tool for assessing emotional functioning and welfare in dogs and cats: A review. Applied Animal Behaviour Science 236, 105148.

Dogs and cats have been extensively studied of late in relation to their paw preferences, with both species showing preferential motor bias at the level of the individual. Over the years, a wide range of...

Howarth, E. R. I., Kemp, C., Thatcher, H. R. et al. 2021. Developing and validating attention bias tools for assessing trait and state affect in animals: A worked example with Macaca mulatta. Applied Animal Behaviour Science 234, 105198.

Attention bias is a new approach to assessing animal affect that has shown promising results in several animal species. It describes a tendency to preferentially attend to emotional compared to neutral cues and is influenced...

Egan, S., Kearney, C. M., Brama, P. A. J. et al. 2021. Exploring stable-based behaviour and behaviour switching for the detection of bilateral pain in equines. Applied Animal Behaviour Science 235, 105214.

Efficient and sensitive animal pain detection approaches are increasingly studied with the goal of improving animal welfare and monitoring the efficacy of treatment and rehabilitation. The aim of this study was to determine the potential...

Epstein, J., Dowling-Guyer, S., McCobb, E. et al. 2021. Addressing stress in dogs in shelters through a novel visual and auditory enrichment device. Applied Animal Behaviour Science 236, 105215.

Dogs experience both acute and chronic stress when living in animal shelters. Current best practices recommend a variety of techniques for reducing stress such as enhanced human interactions including play or training, novel feeding strategies...

Stomp, M., d’Ingeo, S., Henry, S. et al. 2021. Brain activity reflects (chronic) welfare state: Evidence from individual electroencephalography profiles in an animal model. Applied Animal Behaviour Science 236, 105271.

Assessing the animal welfare state is a challenge given the subjective individual cognitive and emotional processing involved. Electroencephalography (EEG) spectrum analysis has proved an ecologically valid recording situation to assess the link between brain processes...

Mönki, J., Saastamoinen, M., Karikoski, N. et al. 2021. Effects of bedding material on equine lower airway inflammation: A crossover study comparing peat and wood shavings. Frontiers in Veterinary Science 8, 656814.

Bedding materials affect stable air hygiene, and thus the development and exacerbation of equine asthma. There is limited knowledge concerning the effects of different types of bedding material on equine lower airway inflammation. The objective...

Coleman, K., Shapiro, S. J. (Eds.). 2021. Behavioral Biology of Laboratory Animals (1st ed). CRC Press, Boca Raton, FL.

This 30-chapter volume informs students and professionals about the behavioral biology of animals commonly housed in laboratory and other captive settings. Each species evolved under specific environmental conditions, resulting in unique behavioral patterns, many of...

Zannella, A., Stanyon, R., Maglieri, V. et al. 2021. Not all yawns tell the same story: The case of Tonkean macaques. American Journal of Primatology 83(7), e23263.

Here we show for the first time that the plasticity in morphology and duration of yawning in Macaca tonkeana can be associated with different functional contexts. Macaca tonkeana is classified as a tolerant macaque species...

Cowl, V. B., Walker, S. L., Shultz, S. 2021. Reproductive males are effective at managing conflict in captive Sulawesi crested macaques (Macaca nigra). American Journal of Primatology 83(7), e23266.

Group size, density, and composition significantly influence the expression of agonism and, as demography is frequently manipulated in captivity, natural mechanisms of conflict management may be disrupted. Here, we examine how changes to the social...

Sørensen, D., Cloutier, S., Gaskill, B. (Eds.). 2021. Animal-centric Care and Management - Enhancing Refinement in Biomedical Research. CRC Press, Boca Raton, FL.

The concept of the 3Rs (Refinement, Reduction and Replacement) has been used as a framework for improving the welfare of laboratory animals for the last half century. By establishing an animal-centric view on housing and...

Martinic, G. 2021. Husbandry and healthcare of the Olive python (Liasis olivaceus). Animal Technology and Welfare 20(1), 44-50.

The article describes the care of the Olive python (Liasis olivaceus) including information on housing, feeding, handling, as well as the general health care of these animals. Some of the information presented is derived from...

Auer, U., Kelemen, Z., Engl, V. et al. 2021. Activity time budgets—A potential tool to monitor equine welfare? Animals 11(3), 850.

Horses’ behavior can provide valuable insight into their subjective state and is thus a good indicator of welfare. However, its complexity requires objective, quantifiable, and unambiguous evidence-based assessment criteria. As healthy, stress-free horses exhibit a...

Janczarek, I., Stachurska, A., Wilk, I. et al. 2021. Horse preferences for insolation, shade or mist curtain in the paddock under heat conditions: Cardiac and behavioural response analysis. Animals 11(4), 933.

The horse’s welfare and, consequently, the emotional arousal may be connected with stressful environmental conditions. This study aimed to determine whether horses show behavioural or physiological symptoms of thermal discomfort and if their behaviour and...

Manteca Vilanova, X., Beaver, B., Uldahl, M. et al. 2021. Recommendations for ensuring good welfare of horses used for industrial blood, serum, or urine production. Animals 11(5), 1466.

Various pharmaceutical products have been derived from horse blood and urine for over a century. Production of biologics and therapeutics from these samples is a niche industry and often occurs in regions with little regulation...

van Loon, J. P. A. M., Macri, L. 2021. Objective assessment of chronic pain in horses using the Horse Chronic Pain Scale (HCPS): A scale-construction study. Animals 11(6), 1826.

The objective assessment of chronic pain is of utmost importance for improving welfare and quality of life in horses. Freedom from disease and pain is one of the ‘five freedoms’ that are necessary for animal...

Krueger, K., Esch, L., Farmer, K. et al. 2021. Basic needs in horses?—A literature review. Animals 11(6), 1798.

Every animal species has particular environmental requirements that are essential for its welfare, and when these so-called “basic needs” are not fulfilled, the animals suffer. The basic needs of horses have been claimed to be...

Andersen, P. H., Broomé, S., Rashid, M. et al. 2021. Towards machine recognition of facial expressions of pain in horses. Animals 11(6), 1643.

Automated recognition of human facial expressions of pain and emotions is to a certain degree a solved problem, using approaches based on computer vision and machine learning. However, the application of such methods to horses...

Mazzola, S. M., Colombani, C., Pizzamiglio, G. et al. 2021. Do you think I am living well? A four-season hair cortisol analysis on leisure horses in different housing and management conditions. Animals 11(7), 2141.

The satisfaction of leisure horses’ behavioral needs has begun to be considered a priority, linked to the awareness that horses kept in single boxes may be deprived of social contact and the possibility to perform...