Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Bučková, K., Moravcsíková, Á., Šárová, R. et al. 2022. Indication of social buffering in disbudded calves. Scientific Reports 12(1), 13348.

Most dairy calves are housed individually in early ontogeny but social housing has positive effects on calf welfare including an advantage of social buffering, i.e., when negative effects of stress are mitigated through social support...

Charbonneau, J. A., Amaral, D. G. Bliss-Moreau, E. 2022. Social housing status impacts rhesus monkeys’ affective responding in classic threat processing tasks. Scientific Reports 12(1), 4140.

Individuals’ social contexts are broadly recognized to impact both their psychology and neurobiology. These effects are observed in people and in nonhuman animals who are the subjects for comparative and translational science. The social contexts...

Escribano, D., Doldán-Martelli, V., Cronin, K. A. et al. 2022. Chimpanzees organize their social relationships like humans. Scientific Reports 12(1), 16641.

Human relationships are structured in a set of layers, ordered from higher (intimate relationships) to lower (acquaintances) emotional and cognitive intensity. This structure arises from the limits of our cognitive capacity and the different amounts...

Thompson, J. S., Hudson, C. D., Huxley, J. N. et al. 2022. A randomised controlled trial to evaluate the impact of indoor living space on dairy cow production, reproduction and behaviour. Scientific Reports 12(1), 3849.

As a global society, we have a duty to provide suitable care and conditions for farmed livestock to protect animal welfare and ensure the sustainability of our food supply. The suitability and biological impacts of...

Dickson, E. J., Campbell, D. L. M., Lee, C. et al. 2022. Beef cattle preference and usage of environmental enrichments provided simultaneously in a pasture-based environment. Animals 12(24), 3544.

Environmental enrichment can improve livestock welfare through increasing environmental complexity to promote a greater range of natural behaviours. However, there is limited understanding of the need for and impacts of enrichments for extensively managed beef...

Fink, L. B., Mukobi, A., Gruber, L. et al. 2022. Longitudinal analysis of variability in fecal glucocorticoid metabolite concentrations in three orangutans (Pongo pygmaeus pygmaeus and Pongo pygmaeus abelii) before, during, and after transition from a regular habitat environment to temporary housing in indoor holding facilities. Animals 12(23), 3303.

Considerable research has been conducted on the effects of inter-institutional transfers, but far less consideration has been given to intra-institutional transfers and extended housing in off-habitat holding. On 15 May 2018, The Oregon Zoo’s orangutans...

Sonne, C., Alstrup, A. K. O., Pertoldi, C. et al. 2022. Cortisol in manure from cattle enclosed with nofence virtual fencing. Animals 12(21), 3017.

To increase the efficiency and geographic expansion of nature conservation, large grazers have recently been used, either in the form of wild hoof-bearing animals or as domesticated ruminants including cattle. Using physical fencing limits migrating...

Palacio, S., Adam, S., Bergeron, R. et al. 2022. Minor stall modifications and outdoor access can help improve dairy cow welfare in tie-stalls. Canadian Journal of Animal Science 103(1), 1–14.

Tie-stalls are the most confining method of housing for dairy cows and remain commonly used to house cows in many countries. Finding methods to improve animal welfare through housing modifications and alternative management strategies are...

Brando, S., Coe, J. 2022. Confronting back-of-house traditions: Primates as a case study. Journal of Zoological and Botanical Gardens 3(3), 366–397.

This review commentary focuses on traditional management practices and facility design with suggested improvements in non-public primate management areas, often called “back-of-house”, (henceforth BOH) in zoos, sanctuaries, and research facilities. Progress has been made toward...

Aigueperse, N., Vasseur, E. 2021. Providing an outdoor exercise area affects tie-stall cow reactivity and human-cow relations. Frontiers in Veterinary Science 7, 1172.

Confinement and restriction of movement are a reality for most dairy cows. Providing outdoor access is one method to increase movement opportunities. However, leading cows to an outdoor exercise area increases their exposure to manipulations...

Yamanashi, Y., Nemoto, K., Alejandro, J. 2021. Social relationships among captive male pygmy slow lorises (Nycticebus pygmaeus): Is forming male same-sex pairs a feasible management strategy? American Journal of Primatology 83, e23233.

Little is known about the social behavior of pygmy slow lorises, in particular, the social relationships of same‐sex individuals have rarely been investigated. The Slow Loris Conservation Center was built at the Japan Monkey Center...

Rox, A., van Vliet, A. H., Langermans, J. A. M. et al. 2021. A stepwise male introduction procedure to prevent inbreeding in naturalistic macaque breeding groups. Animals 11(2), 545.

Male introductions into captive primate breeding groups can be risky and unsuccessful. However, they are necessary to prevent inbreeding in naturalistic breeding groups. The procedure used to introduce new individuals may affect the success and...

Zigo, F., Vasil', M., Ondrašovičová, S. et al. 2021. Maintaining optimal mammary gland health and prevention of mastitis. Frontiers in Veterinary Science 8, 607311.

In dairy industry, quality of produced milk must be more important than quantity without a high somatic cells count (SCC) or pathogens causing mastitis of dairy cows and consumer diseases. Preserving the good health of...

Bailey, K. L., Young, L. A., Long, C. E. et al. 2021. Use of introduction enclosures to integrate multimale cohorts into groups of female rhesus macaques (Macaca mulatta). JAALAS 60(1), 103-111.

Integrating animals into a new group is a challenge for both free-ranging and captive adult male rhesus monkeys (Macaca mulatta), and for females in groups receiving new males. To ensure the genetic viability of the...

Bader, L., Janavaris, M., Coleman, K. et al. 2021. It takes a village: A case study in improving animal welfare with a team approach. Laboratory Animal Science Professional 9(1) (January/February), 38-40.

There are many factors that need to be considered when caring for groups of nonhuman primates (NHPs) in research, including clinical, behavioral, and scientific issues. Otherwise, there is the potential that decisions are made without...

Funkhouser, J. A., Mayhew, J. A., Mulcahy, J. et al. 2021. Human caregivers are integrated social partners for captive chimpanzees. Primates 62(2), 297–309.

In a captive environment, it is challenging to ensure the highest level of social and psychological well-being for species with naturally complex social organizations and structures. There is a growing need to meet the social...

Neave, H. W., Webster, J. R., Zobel, G. 2021. Anticipatory behaviour as an indicator of the welfare of dairy calves in different housing environments. PLOS ONE 16(1), e0245742.

Anticipatory behaviour occurs in the period before a reward or other positive event is presented and has been interpreted as an indicator of the welfare and emotional state of animals. The use of this indicator...

Crump, A., Jenkins, K., Bethell, E. J. et al. 2021. Optimism and pasture access in dairy cows. Scientific Reports 11(1), 4882.

Allowing dairy cattle to access pasture can promote natural behaviour and improve their health. However, the psychological benefits are poorly understood. We compared a cognitive indicator of emotion in cattle either with or without pasture...

Leeds, A., Boyer, D., Ross, S. R. et al. 2021. Patterns of wounding in mixed-sex social groups of western lowland gorillas (Gorilla gorilla gorilla). Applied Animal Behaviour Science 236, 105226.

Long-term, multi-institutional assessments have become a reliable tool for evaluating patterns of wounding in zoo-living primates, with results informing on best practices for species-specific care protocols and population management strategies. For western lowland gorillas (Gorilla...

Robinson, L. M., Waran, N. K., Handel, I. et al. 2021. Happiness, welfare, and personality in rhesus macaques (Macaca mulatta). Applied Animal Behaviour Science 236, 105268.

When we treat an animal’s welfare as an individual experience, we should consider the possibility that it may be associated with individual differences in personality. We tested for such associations in 44 socially housed rhesus...

Prior, H., Holbrook, M. 2021. Strategies to encourage the adoption of social housing during cardiovascular telemetry recordings in non-rodents. Journal of Pharmacological and Toxicological Methods 108, 106959.

The National Centre for the Replacement, Refinement and Reduction of Animals in Research (NC3Rs) is working with industry to promote social housing during cardiovascular telemetry recordings within non-rodent safety pharmacology and toxicology studies. Following surveys...

Cowl, V. B., Walker, S. L., Shultz, S. 2021. Reproductive males are effective at managing conflict in captive Sulawesi crested macaques (Macaca nigra). American Journal of Primatology 83(7), e23266.

Group size, density, and composition significantly influence the expression of agonism and, as demography is frequently manipulated in captivity, natural mechanisms of conflict management may be disrupted. Here, we examine how changes to the social...

Sørensen, D., Cloutier, S., Gaskill, B. (Eds.). 2021. Animal-centric Care and Management - Enhancing Refinement in Biomedical Research. CRC Press, Boca Raton, FL.

The concept of the 3Rs (Refinement, Reduction and Replacement) has been used as a framework for improving the welfare of laboratory animals for the last half century. By establishing an animal-centric view on housing and...

Mahendran, S. A., Wathes, D. C., Booth, R. E. et al. 2021. The health and behavioural effects of individual versus pair housing of calves at different ages on a UK commercial dairy farm. Animals 11(3), 612.

Housing management of dairy calves is one of the factors that contributes to a successful rearing outcome. Individual housing of pre-weaned calves is thought to provide enhanced biosecurity and easier monitoring of the individual, and...

Beaver, A., Strazhnik, E., von Keyserlingk, M. A. G. et al. 2021. The freestall reimagined: Effects on stall hygiene and space usage in dairy cattle. Animals 11(6), 1711.

Modern freestall barns for dairy cattle have been constructed with considerations for dairy cow cleanliness; partitions and other stall features such as neck rails are designed to reduce manure contamination of bedding and decrease farm...