Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Warwick, C., Pilny, A., Steedman, C. et al. 2023. Mobile zoos and other itinerant animal handling events: Current status and recommendations for future policies. Animals 13(2), 214.

Mobile zoos are events in which non-domesticated (exotic) and domesticated species are transported to venues such as schools, hospitals, parties, and community centres, for the purposes of education, entertainment, or social and therapeutic assistance. We...

Spitzer, H. B., Meagher, R. K., Proudfoot, K. L. 2022. The impact of providing hiding spaces to farmed animals: A scoping review. PLOS ONE 17(11), e0277665.

Many wild animals perform hiding behaviours for a variety of reasons, such as evading predators or other conspecifics. Unlike their wild counterparts, farmed animals often live in relatively barren environments without the opportunity to hide...

Ramos, J., Balasch, J. C., Tort, L. 2021. About welfare and stress in the early stages of fish. Frontiers in Veterinary Science 8, 634434.

In conclusion, the investigations carried out up to now demonstrate that during the early stages fish show high sensitivity to many types of stressors involving an array of responses to overcome alterations that could affect...

Sandgrav Bak, A., Malmkvist, J. 2020. Barren housing and negative handling decrease the exploratory approach in farmed mink. Applied Animal Behaviour Science 222, 104901.

We examined the influence of cage enrichment and different types of short-term experiences on the temperament of farmed mink. We used juvenile Palomino mink (n = 600, housed in pairs of one male and one female) in...

Boers, K. L., Allender, M. C., Novak, L. J. et al. 2020. Assessment of hematologic and corticosterone response in free-living eastern box turtles (Terrapene carolina carolina) at capture and after handling. Zoo Biology 39(1), 13-22.

Hematology is a common tool for wildlife health assessments. Manual leukocyte counts are required in reptiles, however, disagreement between quantification methods has been observed in some chelonians. This study determined agreement between two methods of...

Schou, T. M., Palme, R., Malmkvist, J. et al. 2019. Relocation shortly after mating does not have a major impact on stress responses and reproduction in female farm mink. Applied Animal Behaviour Science 214, 89-94.

On farms, female mink are exposed to acute stressors multiple times due to handling, capturing and transport with restricted movement being a typical part of the mating procedure. We hypothesised that no relocation (group NON...

Madureira, T. V., Costa, J. L., Malhão, F. et al. 2019. Design of a multi-parametric profile for assessing the acclimation period of juvenile brown trout after an acute transport to new housing environment. Applied Animal Behaviour Science 219, 104835.

Fish batches are often transported from aquacultures to laboratory facilities, and this fact triggers a pre-stressed condition that can cause alterations in both physiological and behavioural status of animals. The acclimation before fish trials is...

McIntosh, M. K., Armitage-Brown, B., Levy, R. 2019. Refinements of equipment and methodology to reduce risk during pole-guided chair transfer of nonhuman primates. JAALAS 58(4), 462-468.

Neurophysiologic studies of NHP commonly involve their transfer from a housing enclosure to a laboratory by using a mobile chair. This transfer should be performed in a manner that is safe and minimizes stress for...

Watz, J. 2019. Structural complexity in the hatchery rearing environment affects activity, resting metabolic rate and post-release behaviour in brown trout Salmo trutta. Journal of Fish Biology 95(2), 638-641.

The effects of structural enrichment in the hatchery rearing environment of brown trout Salmo trutta was linked to post-release performance. Enrichment resulted in reduced swimming activity scored in an open field test and reduced movement...

Eichner, M., Garcia, K. 2019. Increase in morbidity and mortality in a shipment of red-eared slider turtles (Trachemys scripta elegans). Laboratory Animals 53(6), 634–640.

A cohort of captive-bred red-eared slider turtles, Trachemys scripta, was received from a commercial vendor. Shortly after arrival, several turtles presented as lethargic with subjectively pale skin and multifocal areas of cotton-like tufts in the...

Cox, R. J., Nol, P., Ellis, C. K. et al. 2019. Research with agricultural animals and wildlife. ILAR Journal 60(1), 66-73.

In fiscal year 2016, agricultural animals such as swine, sheep, goats, and cattle represented 10% of the 820 812 animals used in USDA-regulated research. In addition to traditional agricultural animals, research studies using captive wildlife...

Stevens, C. 2019. Refining handling for small laboratory fishes. Animal Technology and Welfare 18(3), 191-193.

Fishes in captivity, such as those used in laboratory research, may experience handling on a regular basis. In the laboratory, handling is usually done with dip-nets, and involves pursuit, confinement and capture and removal of...

O’Rourke, D. P., Baccanale, C. L., Stoskopf, M. K. 2018. Nontraditional laboratory animal species (cephalopods, fish, amphibians, reptiles, and birds). ILAR Journal 59(2), 168-176.

Aquatic vertebrates and cephalopods, amphibians, reptiles, and birds offer unique safety and occupational health challenges for laboratory animal personnel. This paper discusses environmental, handling, and zoonotic concerns associated with these species.

Lopes, V. M., Sampaio, E., Roumbedakis, K. et al. 2017. Cephalopod biology and care, a COST FA1301 (CephsInAction) training school: Anaesthesia and scientific procedures. Invertebrate Neuroscience 17, 8.

Cephalopods are the sole invertebrates included in the list of regulated species following the Directive 2010/63/EU. According to the Directive, achieving competence through adequate training is a requisite for people having a role in the...

Burton, D., Burton, M. (Eds). 2017. Essential Fish Biology: Diversity, Structure and Function. Oxford University Press: Oxford, U.K., 448 pp.

This book summarizes the basic features of living fish. It is introduced by a chapter on the diversity of a group which has over 30,000 species, the largest within the vertebrates, describing the classification systems...

Monreal-Pawlowsky, T., Marco-Cabedo, V., Manteca, X. et al. 2017. Environmental enrichment facilitates release and survival of an injured loggerhead sea turtle (Caretta caretta) after ten years in captivity. Journal of Zoo and Aquarium Research 5(4), 182-186.

In June 2006 a loggerhead sea turtle (Caretta caretta) was admitted to a rescue centre on the Mediterranean coast with severe fishing net entanglement in its fore right flipper. The flipper could not be saved...

Wallace, P. Y., Asa, C. S., Agnew, M. et al. 2016. A review of population control methods in captive-housed primates. Animal Welfare 25(1), 7-20.

The success of breeding primates in captivity has led to a surplus number of animals in collections. This review examines published journals and key books to investigate the various methods of primate population control. Hormonal...

Watts, A. 2010. Thinking outside the box in box training. Tech Talk [The Newsletter for Laboratory Animal Science Technicians] 15(2), 3.

At the Oregon National Primate Research Center, we train animals to enter transfer boxes using positive reinforcement training (PRT), a type of training in which the trainer reinforces desired behaviors (such asentering the transfer box)...

Moreau, E. 2010. To squeeze or not to squeeze? A Discussion on LAREF, September, 2009. Laboratory Primate Newsletter 49(2), 3-4.

The discussion was started by the following questions: "Is the squeeze-back mechanism more or less stressful than the pole and collar system for removing a macaque from his cage for an IM (intramuscular) injection?" and...

Egeler, J. L., Hoekwater, S., Hoffman, H. D. 2010. A novel approach for utilizing large group-housing style cages for nonhuman primates in toxicology studies. American Association for Laboratory Animal Science [AALAS] Meeting Official Program, 716 (Abstract #P110).

The ability to provide permanent group-housed caging for nonhuman primates involved in toxicology research is quickly becoming an important step in improving the overall quality of life for these animals. This type of caging offers...

Branson, E. J. (Ed.) 2008. Fish Welfare. Blackwell Publishing Ltd: Oxford, UK, 300 p.

Fish have the same stress response and powers of nociception as mammals. Their behavioural responses to a variety of situations suggest a considerable ability for higher level neural processing – a level of consciousness equivalent...

Conour, L. A., Murray, K. A., Brown, M. J. 2006. Preparation of animals for research -- Issues to consider for rodents and rabbits. ILAR Journal 47(4), 283-293.

This article provides details to consider when preparing to use animals in biomedical research. The stress of transport and receipt of animals into a new environment mandate the need for a period of stabilization and...

Fernández-Teruel, A., Giménez-Llort, L., Escorihuela, R. M. et al. 2002. Early-life handling stimulation and environmental enrichment: Are some of their effects mediated by similar neural mechanisms? Pharmacology Biochemistry and Behavior 73(1), 233-245.

Neonatal (early) handling (EH) and environmental enrichment (EE) of laboratory rodents have been the two most commonly used methods of providing supplementary environmental stimulation in order to study behavioral and neurobiological plasticity. A large body...

Reinhardt, V. 2001. The impossible housing and handling conditions of monkeys in research laboratories. IPPL [International Protection League] News 28(2), 5-7.

The prevailing housing and handling conditions of monkeys in research institutions is described. The present situation in primate research laboratories strongly suggests that professional judgment is no guarantee that the inhumane housing and handling conditions...

Reinhardt, V., Reinhardt, A. 2000. Blood collection procedure of laboratory primates: A neglected variable in biomedical research. Journal of Applied Animal Welfare Science 3(4), 321-333.

A survey of 75 biomedical articles dealing with stress-dependent blood parameters in caged primates revealed that the conditions under which blood collection occurred were in most cases [72%] described either not at all or so...