Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Lambert, H., Cornish, A., Waley, D. 2024. The value of regulating stocking densities in aquaculture must not be dismissed: A reply to Saraiva et al. 2022. Frontiers in Veterinary Science 10.

We would like to rebut the argument made by Saraiva et al. (1) in their paper “Finding the “golden stocking density”: a balance between fish welfare and farmers' perspectives,” that stocking densities should not be...

Kannan, G., Batchu, P., Naldurtiker, A. et al. 2023. Habituation to livestock trailer and its influence on stress responses during transportation in goats. Animals 13(7), 1191.

This experiment was conducted to determine the effects of habituation to livestock trailers on stress responses in goats transported for long periods. Intact male Spanish goats (12-month old; BW = 31.6 ± 0.34 kg; N...

Vickery, H. M., Neal, R. A., Stergiadis, S. et al. 2023. Gradually weaning goat kids may improve weight gains while reducing weaning stress and increasing creep feed intakes. Frontiers in Veterinary Science 10, 1200849.

Most dairy goat farms rear kids on ad libitum milk replacer; calf research suggests this improves growth and welfare, but solid feed intakes are problematic. Weaning can be gradual (incremental milk reduction) or abrupt (sudden...

Gauy, A. C. dos S., Bolognesi, M. C., Gonçalves-de-Freitas, E. 2023. Body tactile stimulation reduces the effects of high stocking density on the welfare of Nile tilapia (Oreochromis niloticus). Fishes 8(6), 320.

High stocking density is used in aquaculture to optimize farming. However, such strategies can stress territorial fish by increasing aggression, thus harming the fish welfare and productive performance. Here, we tested the effect of long-term...

Hirata, S. 2022. Sky after 30 years: A brief biography of three biomedical research chimpanzees in Japan. Primates 63(2), 105–108.

This article describes the strategies employed by Kumamoto Sanctuary in Japan to integrate 3 retired chimpanzees – who each spent 30 years singly housed in a biomedical facility – with the sanctuary’s other residents.

Spitzer, H. B., Meagher, R. K., Proudfoot, K. L. 2022. The impact of providing hiding spaces to farmed animals: A scoping review. PLOS ONE 17(11), e0277665.

Many wild animals perform hiding behaviours for a variety of reasons, such as evading predators or other conspecifics. Unlike their wild counterparts, farmed animals often live in relatively barren environments without the opportunity to hide...

Mota-Rojas, D., Velarde, A., Marcet-Rius, M. et al. 2022. Analgesia during parturition in domestic animals: Perspectives and controversies on its use. Animals 12(19), 2686.

This article analyzes the physiological role of pain during parturition in domestic animals, discusses the controversies surrounding the use of opioids, non-steroidal anti-inflammatory drugs (NSAIDs), and local analgesics as treatments during labor, and presents the...

Saraiva, J. L., Rachinas-Lopes, P., Arechavala-Lopez, P. 2022. Finding the “golden stocking density”: A balance between fish welfare and farmers’ perspectives. Frontiers in Veterinary Science 9, 930221.

The effects of stocking density on fish welfare are complex and involve many interacting parameters. This complex relationship between fish welfare, stocking density and influencing factors make it challenging to define a specific optimal (“golden”)...

Anderson, M. G., Campbell, A. M., Kuhn, D. D. et al. 2022. Impact of environmental complexity and stocking density on affective states of rainbow trout (Oncorhynchus mykiss). Animal Cognition 25(5), 1331–1343.

Environmental condition, such as environmental complexity or stocking density, can directly or indirectly influence animal emotion and ultimately, affective state. Affective states of animals can be assessed through judgement bias tests, evaluating responses to ambiguous...

Ramos, J., Balasch, J. C., Tort, L. 2021. About welfare and stress in the early stages of fish. Frontiers in Veterinary Science 8, 634434.

In conclusion, the investigations carried out up to now demonstrate that during the early stages fish show high sensitivity to many types of stressors involving an array of responses to overcome alterations that could affect...

Spiezio C., Vaglio, S., Vandelle C. et al. 2021. Effects of rearing on the behaviour of zoo-housed chimpanzees (Pan troglodytes). Folia Primatologica 92(2), 91–102.

Early-life experiences may considerably affect the behavioural patterns of adult primates. Particularly, atypical rearing practices might lead to abnormal behaviours and social-sexual deficiencies in captive, adult non-human primates. We conducted behavioural observations of mother-reared (n...

da Silva Medeiros Elidio, H., Coelho, J. W. R., Cavalcanti Pereira da Silva, L. C. et al. 2021. Housing density and aggression in Syrian hamsters. JAALAS 60(5), 506-509.

The Syrian hamster (Mesocricetus auratus) is a solitary and naturally territorial animal, with female hamsters being more aggressive than males. This behavior makes handling difficult because they are usually housed in groups, which can lead...

Toinon, C., Waiblinger, S., Rault, J.-L. 2021. Maternal deprivation affects goat kids’ stress coping behaviour. Physiology & Behavior 239, 113494.

Maternal deprivation early in life has been shown to disrupt neonates’ development. Nevertheless, separating the young animals from their dams soon after birth remains a common practice in dairy farm husbandry. This study investigated the...

Zobel, G., Freeman, H., Watson, T. et al. 2020. Effect of different milk-removal strategies at weaning on feed intake and behavior of goat kids. Journal of Veterinary Behavior 35, 62-68.

Weaning from milk is stressful. We aimed to investigate the effect of three weaning strategies on feed intake and behavior of dairy goat kids. Forty-five, 3-month-old Saanen cross goats were allocated to one of three...

Kennedy, R. J., Evans, D., Allen, M. 2020. Long-term retention of dummy acoustic transmitters in adult brown trout. Journal of Fish Biology 97(4), 1281–1284.

A group of 36 1+ age class Salmo trutta were surgically implanted with dummy acoustic tags and monitored for 370 days. In total 13 tags were expelled throughout the experiment with an overall tag loss...

Schou, T. M., Palme, R., Malmkvist, J. et al. 2019. Relocation shortly after mating does not have a major impact on stress responses and reproduction in female farm mink. Applied Animal Behaviour Science 214, 89-94.

On farms, female mink are exposed to acute stressors multiple times due to handling, capturing and transport with restricted movement being a typical part of the mating procedure. We hypothesised that no relocation (group NON...

Madureira, T. V., Costa, J. L., Malhão, F. et al. 2019. Design of a multi-parametric profile for assessing the acclimation period of juvenile brown trout after an acute transport to new housing environment. Applied Animal Behaviour Science 219, 104835.

Fish batches are often transported from aquacultures to laboratory facilities, and this fact triggers a pre-stressed condition that can cause alterations in both physiological and behavioural status of animals. The acclimation before fish trials is...

Watz, J. 2019. Structural complexity in the hatchery rearing environment affects activity, resting metabolic rate and post-release behaviour in brown trout Salmo trutta. Journal of Fish Biology 95(2), 638-641.

The effects of structural enrichment in the hatchery rearing environment of brown trout Salmo trutta was linked to post-release performance. Enrichment resulted in reduced swimming activity scored in an open field test and reduced movement...

Champneys, T., Castaldo, G., Consuegra, S., et al. 2018. Density dependent changes in neophobia and stress-coping styles in the world’s oldest farmed fish. Royal Society Open Science 5(12), 181473.

Farmed fish are typically reared at densities much higher than those observed in the wild, but to what extent crowding results in abnormal behaviours that can impact welfare and stress coping styles is subject to...

Lopes, V. M., Sampaio, E., Roumbedakis, K. et al. 2017. Cephalopod biology and care, a COST FA1301 (CephsInAction) training school: Anaesthesia and scientific procedures. Invertebrate Neuroscience 17, 8.

Cephalopods are the sole invertebrates included in the list of regulated species following the Directive 2010/63/EU. According to the Directive, achieving competence through adequate training is a requisite for people having a role in the...

Burton, D., Burton, M. (Eds). 2017. Essential Fish Biology: Diversity, Structure and Function. Oxford University Press: Oxford, U.K., 448 pp.

This book summarizes the basic features of living fish. It is introduced by a chapter on the diversity of a group which has over 30,000 species, the largest within the vertebrates, describing the classification systems...

Yamanashi, Y., Teramoto, M., Morimura, N. et al. 2016. Effects of relocation and individual and environmental factors on the long-term stress levels in captive chimpanzees (Pan troglodytes): Monitoring hair cortisol and behaviors. PLOS ONE 11(7), e0160029.

Understanding the factors associated with the long-term stress levels of captive animals is important from the view of animal welfare. In this study, we investigated the effects of relocation in addition to individual and environmental...

Wallace, P. Y., Asa, C. S., Agnew, M. et al. 2016. A review of population control methods in captive-housed primates. Animal Welfare 25(1), 7-20.

The success of breeding primates in captivity has led to a surplus number of animals in collections. This review examines published journals and key books to investigate the various methods of primate population control. Hormonal...

Sánchez-Muros, M. J., Sánchez, B., Barroso, F. G. et al. 2016. Effects of culture densities on feed demand, behavioural tests and on the hepatic and cerebral oxidative status in tilapia (Oreochromis sp.). Applied Animal Behaviour Science 185, 137-145.

The present study examines whether fish density affects behavioural tests, feed demand, and different parameters indicative of the oxidative status of the liver and brain of Orechromis sp. to identify welfare indicators for fish culturing...

Kranendonk, G., Schippers, E. P. 2014. A pilot study on the effects of a change in behavioural management on the behaviour of captive chimpanzees (Pan troglodytes). Applied Animal Behaviour Science 160, 127-137.

The debate on the use of chimpanzees (Pan troglodytes) in biomedical research has been ongoing for several years now. In 2012, the decision was made to retire a large number of laboratory chimpanzees in the...