Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Machado, M., Freitas Silveira, R. M., Machado Bittar, C. M. et al. 2023. Can the emotional state of calves be noticed by their facial expression and heart rate? Applied Animal Behaviour Science 260, 105874.

The aim of this study was to identify whether or not dairy calves change their facial expression and heart rate according to their emotional state when subjected to a stroking or umbrella stimulus. Thirty-two mixed-breed...

Mandour, A. S., Farag, A., Helal, M. A. Y. et al. 2023. Non-invasive assessment of the intraventricular pressure using novel color M-mode echocardiography in animal studies: Current status and future perspectives in veterinary medicine. Animals 13(15), 2452.

The assessment of diastolic function has received great interest in order to comprehend its crucial role in the pathophysiology of heart failure and for the early identification of cardiac events. Silent changes in the intraventricular...

Arfuso, F., Acri, G., Piccione, G. et al. 2022. Eye surface infrared thermography usefulness as a noninvasive method of measuring stress response in sheep during shearing: Correlations with serum cortisol and rectal temperature values. Physiology & Behavior 250, 113781.

During shearing, animals’ welfare is adversely affected and acute stress occurs. Once animal perceives a threat, it develops behavioral, autonomic, endocrine or immune responses to maintain homeostasis. This study aimed to investigate the usefulness of...

Serrano, C., Antonio, J. 2022. Ultrasound guided surgery as a refinement tool in oncology research. Animals 12(23), 3445.

Refinement is one of the ethical pillars of the use of animals in research. Ultrasonography is currently used in human medicine as a surgical tool for guided biopsies and this idea can be applied to...

Idris, M., Uddin, J., Sullivan, M. et al. 2021. Non-invasive physiological indicators of heat stress in cattle. Animals 11(1), 71.

Cattle are susceptible to heat stress, especially those kept on high levels of nutrition for the purpose of maximising growth rates, which leads to a significant heat increment in their bodies. Consequences include compromised health...

Kim, S., Hidaka, Y. 2021. Breathing pattern analysis in cattle using infrared thermography and computer vision. Animals 11(1), 207.

Breathing patterns can be considered a vital sign providing health information. Infrared thermography is used to evaluate breathing patterns because it is non-invasive. Our study used not only sequence temperature data but also RGB images...

Kovács, L., Kézér, F. L., Bodó, S. et al. 2021. Salivary cortisol as a non-invasive approach to assess stress in dystocic dairy calves. Scientific Reports 11(1), 6200.

The intensity and the magnitude of saliva cortisol responses were investigated during the first 48 h following birth in newborn dairy calves which underwent normal (eutocic, EUT, n = 88) and difficult (dystocic, DYS, n = 70) calvings. The...

Wilson-Welder, J. H., Frank, A. T. 2021. Use of food enrichment for medication delivery in large groups of sheep. Laboratory Animal Science Professional 9(3) (May/June), 40-43.

In a 2018 AALAS webinar on Sheep and Goat Analgesia, Dr. Susie Vogel, a small ruminant expert, introduced the concept of getting sheep and goats to willingly take medication by putting it in a tasty...

Lomb, J., Mauger, A., von Keyserlingk, M. A. G. et al. 2021. Effects of positive reinforcement training for heifers on responses to a subcutaneous injection. Journal of Dairy Science 104(5), 6146-6158.

Cattle are subjected to routine procedures that require restraint and close contact to humans, which are both potentially aversive to the animal. Positive reinforcement training techniques may affect how animals perceive and respond to these...

Lowe, G., McCane, B., Sutherland, M. et al. 2020. Automated collection and analysis of infrared thermograms for measuring eye and cheek temperatures in calves. Animals 10(2), 292.

As the reliance upon automated systems in the livestock industry increases, technologies need to be developed which can be incorporated into these systems to monitor animal health and welfare. Infrared thermography (IRT) is one such...

Young, T., Whiteside, T., Locklear, J. 2020. What is your tattoo ink telling you? Laboratory Animal Science Professional 8(2) (March/April), 62-65.

Tattooing traumatizes the skin, which can result in microbial infections with the severity ranging from minor to life-threating septicemia. Additionally, the metals in colored tattoo ink are known to cause dermal inflammation in some people...

Zemanova, M. A. 2020. Towards more compassionate wildlife research through the 3Rs principles: Moving from invasive to noninvasive methods. Wildlife Biology 2020(1), no page numbers.

Research in ecology and wildlife biology remains crucial for increasing our knowledge and improving species management and conservation in the midst of the current biodiversity crisis. However, obtaining information on population status often involves invasive...

Sutherland, M. A., Worth, G. M., Dowling, S. K. et al. 2020. Evaluation of infrared thermography as a non-invasive method of measuring the autonomic nervous response in sheep. PLOS ONE 15(5): e0233558.

Eye temperature measured using infrared thermography (IRT) can be used as a non-invasive measure of autonomic nervous system (ANS) activity in cattle. The objective of this study was to evaluate if changes in eye temperature...

X. Hui, Kan, E. C. 2019. No-touch measurements of vital signs in small conscious animals. Science Advances 5, eaau0169.

Measuring the heartbeat and respiration of small conscious animals is important for assessing their health and behavior, but present techniques such as electrocardiogram (ECG), ultrasound, and auscultation rely on close skin contact with the animal...

Barreiro-Vázquez, J. D., Miranda, M., Barreiro-Vilanova, M. I. et al. 2019. Characterization of the normal portal and hepatic blood flow of adult Holstein-Friesian cows. Animals 9(6), 386.

Knowledge of physiological portal and hepatic blood flow in cattle is essential for the use of Doppler ultrasound for diagnostic purposes. In this paper, we describe a protocol for the systematic ultrasonography evaluation of the...

Lowe, G., Sutherland, M., Waas, J. et al. 2019. Infrared thermography—A non-invasive method of measuring respiration rate in calves. Animals 9(8), 535.

Respiration rate (RR) is commonly used to assess states of cattle health and welfare such as pain, stress and disease. Traditionally, RR is measured by counting flank movements, a method often considered to be labour-intensive...

Sawyer, G., Webster, D., Narayan, E. 2019. Measuring wool cortisol and progesterone levels in breeding maiden Australian merino sheep (Ovis aries). PLOS ONE 14(4), e0214734.

Hormonal assessment tools are important for determining the reproductive success of production animals. This study used non-invasive wool assessment to quantify changes in progesterone and cortisol levels in reproducing female merino sheep. Wool samples were...

Kalliokoski, O., Jellestad, F. K., Murison, R. 2019. A systematic review of studies utilizing hair glucocorticoids as a measure of stress suggests the marker is more appropriate for quantifying short-term stressors. Scientific Reports 9, 11997.

Quantitating glucocorticoids (GCs) in hairs is a popular method for assessing chronic stress in studies of humans and animals alike. The cause-and-effect relationship between stress and elevated GC levels in hairs, sampled weeks later, is...

Jorquera-Chavez, M., Fuentes, S., Dunshea, F. et al. 2019. Modelling and validation of computer vision techniques to assess heart rate, eye temperature, ear-base temperature and respiration rate in cattle. Animals 9(12), 1089.

Precision livestock farming has emerged with the aim of providing detailed information to detect and reduce problems related to animal management. This study aimed to develop and validate computer vision techniques to track required features...

Carvalho, C. da C. S., Cordeiro de Souza, A., Ferreira, H. C. et al. 2019. Using infrared thermography to measure the body surface temperature of crossbred cows and calves in the semi-arid region of Minas Gerais, Brazil. Journal of Animal Behaviour and Biometeorology 7(3), 132-136.

This study aimed to evaluate the body surface temperature of crossbreed cows and calves managed in the semi-arid region of Minas Gerais (Brazil), using the infrared thermography technique. The thermal environment was characterized by daily...

Cannas, S., Palestrini, C., Canali, E. et al. 2018. Thermography as a non-invasive measure of stress and fear of humans in sheep. Animals 8(9), 146.

No data have been published on the use of infrared thermography (IRT) to evaluate sheep emotions. We assessed whether this technique can be used as a non-invasive measure of negative emotions. Two voluntary animal approach...

Unakafov, A. M., Möller, S., Kagan, I. et al. 2018. Using imaging photoplethysmography for heart rate estimation in non-human primates. PLOS ONE 13(8), e0202581.

For humans and for non-human primates heart rate is a reliable indicator of an individual’s current physiological state, with applications ranging from health checks to experimental studies of cognitive and emotional state. In humans, changes...

Pizzi, R., Dowling, A., Brown, D. et al. 2015. Facial thermography is not useful in assessing body temperature in common squirrel monkeys (Saimiri sciureus) in comparison to rectal temperatures. Journal of Zoo and Aquarium Research 3(3), 94-98.

A group of 39 captive common squirrel monkeys (Saimiri sciureus) had their body temperature measurements compared by rectal thermometry and facial infrared thermal imaging (Flir i3, Flir Systems Inc). Squirrel monkeys were caught up and...

Nääs, I. A., Garcia, R. G., Caldara, F. R. 2015. Infrared thermal image for assessing animal health and welfare. Journal of Animal Behaviour and Biometeorology 2(3), 66-72.

Infrared thermal imaging is a non-destructive testing technology that can be used to determine the superficial temperature of objects. This technology has an increasing use in detecting diseases and distress in animal husbandry within the...

Reinhardt, V. (ed.) 2013. Compassion Makes a Difference - Discussions by the Laboratory Animal Refinement & Enrichment Forum [LAREF], Volume III. Animal Welfare Institute, Washington, DC.

This is the third volume of discussions that took place on the Laboratory Animal Refinement & Enrichment Forum (LAREF). This forum is dedicated to the exchange of personal experiences of refining the conditions under which...