Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Machado, M., Freitas Silveira, R. M., Machado Bittar, C. M. et al. 2023. Can the emotional state of calves be noticed by their facial expression and heart rate? Applied Animal Behaviour Science 260, 105874.

The aim of this study was to identify whether or not dairy calves change their facial expression and heart rate according to their emotional state when subjected to a stroking or umbrella stimulus. Thirty-two mixed-breed...

Bakony, M., Kovács, L., Kézér, L. F. et al. 2023. The use of body surface temperatures in assessing thermal status of hutch-reared dairy calves in shaded and unshaded conditions. Frontiers in Veterinary Science 10.

The study was carried out in a Hungarian large-scale dairy farm during a 5-day period in hot August weather. Altogether 16 preweaning calves were chosen for the study. An agricultural mesh with 80% shielding was...

Brezov, D., Hristov, H., Dimov, D. et al. 2023. Predicting the rectal temperature of dairy cows using infrared thermography and multimodal machine learning. Applied Sciences 13(20), 11416.

The paper proposes an approach for estimating the rectal temperature of dairy cows based on the non-invasive real-time monitoring of their respiration rates and the temperature-humidity index (THI) of the environment, combined with the analysis...

Chiba, Y., Nozaki, I., Itoh, M. et al. 2023. Noninvasive measurement of blood calcium concentration using electrocardiography in peripartum Jersey cows. Frontiers in Veterinary Science 10.

We previously developed a noninvasive method for measuring blood calcium concentration (Ca) in Holstein cows on site using electrocardiographic (ECG) variables and calving number, based on a high positive correlation between Ca. Jersey cows easily...

Poudel, S., Fike, J. H., Wright, L. et al. 2023. Non-invasive techniques reveal heifer response to fescue endophyte type in grazing studies. Animals 13(14), 2373.

Cattle grazing tall fescue (Schedonorus arundinaceous) infected with wild-type endophytes (WE) leads to a syndrome commonly known as fescue toxicosis. Replacing WE tall fescue with a novel endophyte-infected (NE) tall fescue can mitigate this problem...

Idris, M., Uddin, J., Sullivan, M. et al. 2021. Non-invasive physiological indicators of heat stress in cattle. Animals 11(1), 71.

Cattle are susceptible to heat stress, especially those kept on high levels of nutrition for the purpose of maximising growth rates, which leads to a significant heat increment in their bodies. Consequences include compromised health...

Kim, S., Hidaka, Y. 2021. Breathing pattern analysis in cattle using infrared thermography and computer vision. Animals 11(1), 207.

Breathing patterns can be considered a vital sign providing health information. Infrared thermography is used to evaluate breathing patterns because it is non-invasive. Our study used not only sequence temperature data but also RGB images...

Kovács, L., Kézér, F. L., Bodó, S. et al. 2021. Salivary cortisol as a non-invasive approach to assess stress in dystocic dairy calves. Scientific Reports 11(1), 6200.

The intensity and the magnitude of saliva cortisol responses were investigated during the first 48 h following birth in newborn dairy calves which underwent normal (eutocic, EUT, n = 88) and difficult (dystocic, DYS, n = 70) calvings. The...

Chmurska-Gąsowska, M., Sowińska, N., Pałka, S. et al. 2021. Non-invasive measurement of thyroid hormones in domestic rabbits. Animals 11(5), 1194.

Thyroid hormones are essential for metabolism, energy homeostasis and reproduction. Hormones can be measured in various biological source materials: blood, feces, urine, saliva and others. The aim of our study was to verify usefulness of...

Lange, A., Waiblinger, S., van Hasselt, R. et al. 2021. Effects of restraint on heifers during gentle human-animal interactions. Applied Animal Behaviour Science 243, 105445.

Gentle human-animal interactions can induce positive emotions in cattle and enhance their welfare. We investigated whether a change in the animals’ perceived control over the situation influences their perception of the interactions. We compared the...

Lowe, G., McCane, B., Sutherland, M. et al. 2020. Automated collection and analysis of infrared thermograms for measuring eye and cheek temperatures in calves. Animals 10(2), 292.

As the reliance upon automated systems in the livestock industry increases, technologies need to be developed which can be incorporated into these systems to monitor animal health and welfare. Infrared thermography (IRT) is one such...

Barreiro-Vázquez, J. D., Miranda, M., Barreiro-Vilanova, M. I. et al. 2019. Characterization of the normal portal and hepatic blood flow of adult Holstein-Friesian cows. Animals 9(6), 386.

Knowledge of physiological portal and hepatic blood flow in cattle is essential for the use of Doppler ultrasound for diagnostic purposes. In this paper, we describe a protocol for the systematic ultrasonography evaluation of the...

Lowe, G., Sutherland, M., Waas, J. et al. 2019. Infrared thermography—A non-invasive method of measuring respiration rate in calves. Animals 9(8), 535.

Respiration rate (RR) is commonly used to assess states of cattle health and welfare such as pain, stress and disease. Traditionally, RR is measured by counting flank movements, a method often considered to be labour-intensive...

Association of Primate Veterinarians. 2019. Association of Primate Veterinarians’ guidelines for nonhuman primate restraint. JAALAS 58(3), 282-284.

The Association of Primate Veterinarians (APV) recognizes that several forms of restraint, including physical and chemical, are necessary for the safe handling of nonhuman primates (NHPs). The following guidelines aim to provide information to researchers...

Jorquera-Chavez, M., Fuentes, S., Dunshea, F. et al. 2019. Modelling and validation of computer vision techniques to assess heart rate, eye temperature, ear-base temperature and respiration rate in cattle. Animals 9(12), 1089.

Precision livestock farming has emerged with the aim of providing detailed information to detect and reduce problems related to animal management. This study aimed to develop and validate computer vision techniques to track required features...

Cox, R. J., Nol, P., Ellis, C. K. et al. 2019. Research with agricultural animals and wildlife. ILAR Journal 60(1), 66-73.

In fiscal year 2016, agricultural animals such as swine, sheep, goats, and cattle represented 10% of the 820 812 animals used in USDA-regulated research. In addition to traditional agricultural animals, research studies using captive wildlife...

Carvalho, C. da C. S., Cordeiro de Souza, A., Ferreira, H. C. et al. 2019. Using infrared thermography to measure the body surface temperature of crossbred cows and calves in the semi-arid region of Minas Gerais, Brazil. Journal of Animal Behaviour and Biometeorology 7(3), 132-136.

This study aimed to evaluate the body surface temperature of crossbreed cows and calves managed in the semi-arid region of Minas Gerais (Brazil), using the infrared thermography technique. The thermal environment was characterized by daily...

Unakafov, A. M., Möller, S., Kagan, I. et al. 2018. Using imaging photoplethysmography for heart rate estimation in non-human primates. PLOS ONE 13(8), e0202581.

For humans and for non-human primates heart rate is a reliable indicator of an individual’s current physiological state, with applications ranging from health checks to experimental studies of cognitive and emotional state. In humans, changes...

McMillan, J. L., Bloomsmith, M. A., Prescott, M. J. 2017. An international survey of approaches to chair restraint of nonhuman primates. Comparative Medicine 67(5), 442–451.

Specifically designed restraint chairs are the preferred method of restraint for research studies that require NHP to sit in place for sustained periods of time. In light of increasing emphasis on refinement of restraint to...

Nääs, I. A., Garcia, R. G., Caldara, F. R. 2015. Infrared thermal image for assessing animal health and welfare. Journal of Animal Behaviour and Biometeorology 2(3), 66-72.

Infrared thermal imaging is a non-destructive testing technology that can be used to determine the superficial temperature of objects. This technology has an increasing use in detecting diseases and distress in animal husbandry within the...

Pater, C. S. 2013. Rabbit hypnosis as a form of mild restraint: A forgotten method. American Association for Laboratory Animal Science [AALAS] Meeting Official Program, 615 (Abstract #PS42).

Rabbit hypnosis or “trancing” was a common restraint technique used for minor procedures such as: nail clipping, tooth trimming, eye exams, and subcutaneous injections. In years past the technique was originally used on pet rabbits...

Buijs, S., Maertens, L., Tuyttens, F. A. M. et al. 2011. Glucocorticoid metabolites in rabbit faeces - Influence of environmental enrichment and cage size. Physiology & Behavior 104(3), 469-473.

The concentration of glucocorticoid metabolites (GCM) in rabbit faeces has been suggested as a non-invasive indicator of stress. In the present study, GCM concentrations were measured in faeces of fattening rabbits kept in groups of...

Moreau, E. 2010. To squeeze or not to squeeze? A Discussion on LAREF, September, 2009. Laboratory Primate Newsletter 49(2), 3-4.

The discussion was started by the following questions: "Is the squeeze-back mechanism more or less stressful than the pole and collar system for removing a macaque from his cage for an IM (intramuscular) injection?" and...

Reinhardt, V. 1997. Training nonhuman primates to cooperate during handling procedures: A review. Animal Technology 48, 55-73.

Twenty-six reports provide detailed information of how primates can be trained to voluntarily cooperate - rather than resist - during blood collection, injection, topical drug application, blood pressure measurement, urine collection, and capture.

Reinhardt, V., Liss, C., Stevens, C. 1995. Restraint methods of laboratory non-human primates: A critical review. Animal Welfare 4(3), 221-238 .

Published information provides scientific evidence that traditional, involuntary restraint techniques of research non-human primates are intrinsically a source of distress resulting from fear. It has been documented that common methods of enforced restraint result in...