Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Lambert, H., Cornish, A., Waley, D. 2024. The value of regulating stocking densities in aquaculture must not be dismissed: A reply to Saraiva et al. 2022. Frontiers in Veterinary Science 10.

We would like to rebut the argument made by Saraiva et al. (1) in their paper “Finding the “golden stocking density”: a balance between fish welfare and farmers' perspectives,” that stocking densities should not be...

Robinson, L. M., Weiss, A. (Eds.) 2023. Nonhuman Primate Welfare: From History, Science, and Ethics to Practice. Springer, Cham, Switzerland. 671 p.

This volume reviews the broad topic of welfare in nonhuman primates under human care. Chapters detail the history of primates in captivity, ethical and legal issues surrounding the use of nonhuman primates as entertainment or...

Bartlett, A., Grinsted, L., Freeman, M. S. 2023. Behaviour, furnishing and vertical space use of captive callimico (Callimico goeldii): Implications for welfare. Animals 13(13), 2147.

Provision of optimal captive care should be supported by species-specific evidence. Callimico (Callimico goeldii) is a small South American callitrichid primate. This study sought to address gaps in species-specific knowledge and captive management research by...

Diao, W., Jia, R., Hou, Y. et al. 2023. Effects of stocking density on the growth performance, physiological parameters, antioxidant status and lipid metabolism of Pelteobagrus fulvidraco in the integrated rice-fish farming system. Animals 13(11), 1721.

Pelteobagrus fulvidraco is a freshwater fish commonly raised in rice fields, yet the optimal stocking density for this species remains unknown. Therefore, this study aimed to investigate the appropriate stocking density of P. fulvidraco in...

Krunt, O., Zita, L., Kraus, A. et al. 2023. Effects of genotype and housing system on rabbit does’ aggressive behaviors and injuries in smallholding conditions. Animals 13(8), 1357.

The objective of the study was to investigate the effects of housing (deep litter + concrete floor vs. deep litter + ground soil with the possibility to dig burrows), and genotype (Mecklenburg or Hyplus) on...

Sokołowicz, Z., Dykiel, M., Topczewska, J. et al. 2023. A comparison of the plumage condition of three egg-laying poultry genotypes housed in non-cage systems. Animals 13(2), 185.

The study covered a total of 810 hens in 3 groups (housing systems) of 270 hens each. The plumage condition of laying hens raised in various types of alternative housing systems, i.e., in deep litter...

Rooney, N. J., Baker, P. E., Blackwell, E.-J. et al. 2023. Run access, hutch size and time-of-day affect welfare-relevant behaviour and faecal corticosterone in pair-housed pet rabbits. Applied Animal Behaviour Science 262, 105919.

Although there exist several studies examining the housing needs of rabbits kept in laboratories and for meat, studies of the requirements of pet rabbits are few and focus entirely on single rabbits. Pet rabbits are...

Lau, A. R., Pinto, B. R., Witczak, L. R. et al. 2023. Room size and offspring presence impact pair-bonded primate affiliation. Applied Animal Behaviour Science 265, 105994.

Primates live in a variety of social groupings and vary in the expression of species-typical behaviors depending upon social conditions. Coppery titi monkeys (Plecturocebus cupreus) are pair-bonding, territorial primates often used to study neurobiology and...

Baßmann, B., Hahn, L., Rebl, A. et al. 2023. Effects of stocking density, size, and external stress on growth and welfare of African catfish (Clarias gariepinus Burchell, 1822) in a commercial RAS. Fishes 8(2), 74.

The effects of semi-intensive (100 kg m−3), intensive (200 kg m−3), and super-intensive (400 kg m−3) stocking densities on the growth and welfare of African catfish (Clarias gariepinus) were investigated under commercial production conditions. Plasma...

Cameron, A. S., Rub, A. M. W., Sandford, B. P. 2023. Evaluation of healing progression at surgical incision sites and the use of antiseptics for enhancing post-operative survival in subyearling Chinook salmon (Oncorhynchus tshawytscha). PLOS ONE 18(7), e0288056.

In an attempt to develop more effective surgical implantation methods for fish, surgical incisions typical of those made for implanting micro-acoustic transmitters into the peritoneal cavity were evaluated on a weekly basis for healing progression...

Griffioen, A. B., Janssen, W., Menke,T. et al. 2022. Does tagging transparent fish increase predation risk? A laboratory study with glass eel (Anguilla anguilla) and sea bass (Dicentrarchus labrax). Journal of Fish Biology 100(1), 184-191.

Barriers in the estuaries of the rivers prevent the immigration of glass eels (Anguilla anguilla) arriving on the European coast every spring. This leads to an unnatural accumulation of migrating glass eels below the barriers...

Swarr, T. R., Myrick, C. A., Fitzpatrick, R. M. 2022. Tag retention in and effects of passive integrated transponder tagging on survival and swimming performance of a small-bodied darter. Journal of Fish Biology 100(3), 705-714.

Fisheries biologists have been hesitant to use passive integrated transponder (PIT) tags in small-bodied fishes (40–200 mm TL) such as darters (Percidae: Etheostomatinae) because of the fishes' size and potential effect on swimming performance. The authors used...

Emm, L., Heydon, J. 2022. The evolution of how guinea pigs are housed at high containment in the Biological Investigations Group. Animal Technology and Welfare 21(2), 137-140.

Previously, we housed guinea pigs in pairs, where study design allowed, using RC2R cages (NKP-Isotec). Our change was to house guinea pigs in bigger groups with more space. This resulted in moving the guinea pigs...

Ragland, N. H., Compo, N. R., Wiltshire, N. et al. 2022. Housing and husbandry alternatives for naked mole rat colonies used in research settings. JAALAS 61(5), 412-418.

Naked mole rats (Heterocephalus glaber) are a unique rodent species originating in Africa and are increasingly being used in research. Their needs and characteristics differ from those of other rodents used in research. Unique housing...

Runde, B. J., Buckel, J. A., Bacheler, N. M. et al. 2022. Evaluation of six methods for external attachment of electronic tags to fish: Assessment of tag retention, growth and fish welfare. Journal of Fish Biology 101(3), 419-430.

External attachment of electronic tags has been increasingly used in fish studies. Many researchers have used ad hoc attachment methods and provided little or no validation for the assumption that tagging itself does not bias...

Lennox, R. J., Stöger, E., Dahlmo, L. S. et al. 2022. Effects of tag type and surgery on migration of Atlantic salmon (Salmo salar) smolts. Journal of Fish Biology 101(3), 515-521.

Tagging salmon smolts to provide information about the timing of outmigration has been a common approach to monitor phenology and model the risk of encountering stressors. However, the validity of tagging has come under scrutiny...

Abazaris, J., Hashway, S. 2022. Vole husbandry at Colorado University Boulder. Laboratory Animal Science Professional 10(4) (July/August), 12-15.

Since they arrived at CU Boulder, we have learned a lot about the voles from the laboratory, other institutions, and our trial-and-error. We hope this information can be helpful to any considering adding voles to...

Adams, C. R., Park, T. J. 2022. The husbandry and management of naked mole-rats (Heterocephalus glaber). Laboratory Animal Science Professional 10(4) (July/August), 16-18.

Naked mole-rats (NMRs) have unique husbandry requirements that need to be considered when maintaining them in captivity. We have successfully maintained NMRs at the University of Illinois at Chicago for more than 20 years. This...

Pantophlet, J., Rodriguez, A., Niekrash, J. et al. 2022. Naked Mole rat modular housing system. Laboratory Animal Science Professional 10(4) (July/August), 24-25.

Naked Mole-rats have been studied in laboratories for decades due to their unique behavior and physiology. They are one of a few species of mammals that maintain a hive social structure, are highly resistant to...

Pantophlet, J., McClusky, D. 2022. Compressed paper column housing enrichment for Naked Mole-rats. Laboratory Animal Science Professional 10(5) (September/October), 42-44.

Naked Mole-rats are relative newcomers in the research world. Due to the complexity of their natural subterranean tunneling system, it has been difficult to replicate in the laboratory environment. Housing standards often differ from the...

Liao, S.-C., Lyu, P.-X., Shen, S.-Y. et al. 2022. Effects of swimming pool conditions and floor types on white roman geese’s physical condition scores and behaviors in an indoor rearing system. Animals 12(23), 3273.

Biosecurity problems, including the continual risk of avian influenza spread by wild birds, have severely affected traditional free-range waterfowl production systems. Regulations and techniques for indoor goose production require more considerations for animal welfare. This...

Saraiva, J. L., Rachinas-Lopes, P., Arechavala-Lopez, P. 2022. Finding the “golden stocking density”: A balance between fish welfare and farmers’ perspectives. Frontiers in Veterinary Science 9, 930221.

The effects of stocking density on fish welfare are complex and involve many interacting parameters. This complex relationship between fish welfare, stocking density and influencing factors make it challenging to define a specific optimal (“golden”)...

Wood, L. 2022. Managing long-term wellness in captive sea turtles. Animal Welfare 31(4), 423–432.

Circumstances surrounding advances in stranding response and veterinary care have created a growing need for the long-term housing of captive sea turtles. However, the difficulty in recreating natural conditions in captive settings places a responsibility...

Lima, A. F., Lima, S. G. C., Nogueira-Filho, S. L. G. et al. 2022. Vocal expression of emotions in farmed spotted paca (Cuniculus paca). Applied Animal Behaviour Science 256, 105753.

Vocal emissions in non-human mammals can be used as non-invasive indicators of animal emotion and welfare. Therefore, we aimed to validate the use of acoustic parameters as indicators of affective states and welfare in farmed...

Bekkozhayeva, D., Cisar, P. 2022. Image-based automatic individual identification of fish without obvious patterns on the body (scale pattern). Applied Sciences 12(11), 5401.

The precision fish farming concept has been widely investigated in research and is highly desirable in aquaculture as it creates opportunities for precisely controlling and monitoring fish cultivation processes and increasing fish welfare. The automatic...