Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Lambert, H., Cornish, A., Waley, D. 2024. The value of regulating stocking densities in aquaculture must not be dismissed: A reply to Saraiva et al. 2022. Frontiers in Veterinary Science 10.

We would like to rebut the argument made by Saraiva et al. (1) in their paper “Finding the “golden stocking density”: a balance between fish welfare and farmers' perspectives,” that stocking densities should not be...

Robinson, L. M., Weiss, A. (Eds.) 2023. Nonhuman Primate Welfare: From History, Science, and Ethics to Practice. Springer, Cham, Switzerland. 671 p.

This volume reviews the broad topic of welfare in nonhuman primates under human care. Chapters detail the history of primates in captivity, ethical and legal issues surrounding the use of nonhuman primates as entertainment or...

Diao, W., Jia, R., Hou, Y. et al. 2023. Effects of stocking density on the growth performance, physiological parameters, antioxidant status and lipid metabolism of Pelteobagrus fulvidraco in the integrated rice-fish farming system. Animals 13(11), 1721.

Pelteobagrus fulvidraco is a freshwater fish commonly raised in rice fields, yet the optimal stocking density for this species remains unknown. Therefore, this study aimed to investigate the appropriate stocking density of P. fulvidraco in...

Morgado, J. N., Lamonaca, E., Santeramo, F. G. et al. 2023. Effects of management strategies on animal welfare and productivity under heat stress: A synthesis. Frontiers in Veterinary Science 10, 1145610.

Climate change includes different dramatic events, and among them, heat stress exposition is the strongest phenomenon affecting the livestock sector. The effects of heat stress events on animal welfare are complex and the economic impacts...

Baßmann, B., Hahn, L., Rebl, A. et al. 2023. Effects of stocking density, size, and external stress on growth and welfare of African catfish (Clarias gariepinus Burchell, 1822) in a commercial RAS. Fishes 8(2), 74.

The effects of semi-intensive (100 kg m−3), intensive (200 kg m−3), and super-intensive (400 kg m−3) stocking densities on the growth and welfare of African catfish (Clarias gariepinus) were investigated under commercial production conditions. Plasma...

Stammen, R. L., Cohen, J. K., Connor-Stroud, F. R. et al. 2022. Enhancing animal welfare by providing custom caging space for nonhuman primates. Laboratory Animal Science Professional 10(1) (January/February), 20-23.

The YNPRC recently renovated two NHP housing areas with a novel facility design and equipped with a customized caging system that offers additional outdoor access, socialization, and enrichment opportunities for NHPs assigned to infectious disease...

Buckmaster, C. L., Levesque, D., LaFollette, M. et al. 2022. Five hot topics in refinement of nonhuman primate neuroscience research. Laboratory Animal Science Professional 10(1) (January/February), 24-26.

Members of the North American 3Rs Collaborative (NA3RsC) refinement initiative have chosen to summarize developments in five hot topics of interest: 1. Tips for welfare-friendly transport, chairing, and restraint; 2. Guidance on refining food and...

Alejandro, J., Huffman, M. A., Bercovitch, F. B. 2022. Costs and benefits of living in a vegetated, compared with non‐vegetated, enclosure in male Japanese macaques (Macaca fuscata). Zoo Biology 41(2), 97-107.

Improving captive environments for primates has been an important tool to enhance animal welfare. One method has been to provide primates with naturalistic vegetated enclosures to promote species-specific behaviors, enhancing interactions with their social and...

Saraiva, J. L., Rachinas-Lopes, P., Arechavala-Lopez, P. 2022. Finding the “golden stocking density”: A balance between fish welfare and farmers’ perspectives. Frontiers in Veterinary Science 9, 930221.

The effects of stocking density on fish welfare are complex and involve many interacting parameters. This complex relationship between fish welfare, stocking density and influencing factors make it challenging to define a specific optimal (“golden”)...

Brando, S., Coe, J. 2022. Confronting back-of-house traditions: Primates as a case study. Journal of Zoological and Botanical Gardens 3(3), 366–397.

This review commentary focuses on traditional management practices and facility design with suggested improvements in non-public primate management areas, often called “back-of-house”, (henceforth BOH) in zoos, sanctuaries, and research facilities. Progress has been made toward...

Ramos, J., Balasch, J. C., Tort, L. 2021. About welfare and stress in the early stages of fish. Frontiers in Veterinary Science 8, 634434.

In conclusion, the investigations carried out up to now demonstrate that during the early stages fish show high sensitivity to many types of stressors involving an array of responses to overcome alterations that could affect...

Sørensen, D., Cloutier, S., Gaskill, B. (Eds.). 2021. Animal-centric Care and Management - Enhancing Refinement in Biomedical Research. CRC Press, Boca Raton, FL.

The concept of the 3Rs (Refinement, Reduction and Replacement) has been used as a framework for improving the welfare of laboratory animals for the last half century. By establishing an animal-centric view on housing and...

Rácz, A., Adorján, G., Fodor, E. et al. 2021. Housing, husbandry and welfare of a “classic” fish model, the paradise fish (Macropodus opercularis). Animals 11(3), 786.

Thanks to its small size, external fertilization and fecundity, over the past four decades, zebrafish (Danio rerio) has become the dominant fish model species in biological and biomedical research. Multiple lines of evidence, however, suggest...

Sailer, L. M., Holinger, M., Burla, J.-B. et al. 2021. Influence of housing and management on claw health in Swiss dairy goats. Animals 11(7), 1873.

Due to a rising demand for goat milk and goat milk products worldwide, it is likely that dairy goat production will be intensified in the future, with larger herds per farm. In Switzerland, as in...

Kaneko, A., Takasu, M., Miyabe-Nishiwaki, T. et al. 2021. Physiological variation in Japanese macaques (Macaca fuscata) housed in different outdoor cages evaluated using the metabolic profile test. Primates 62(4), 609-615.

Captive primates require environmental enrichment to minimize physical and mental stress. However, only a few objective evaluations have been performed to assess environment-induced physiological variations in these animals. In this study, we evaluated the usage...

Archibald, W., Glynn, C. 2021. Refining cages for social housing of non-human primates on ADME studies. Animal Technology and Welfare 20(2), 172-174.

The assessment and understanding of Absorption, Distribution, Metabolism and Elimination (ADME) for new pharmaceuticals is required in regulatory submissions. Typically, ADME studies are conducted using metabolism cages designed for the single housing of animals to...

Schmidt, T., Ferrara, F., Pobloth, A.-M. et al. 2021. Large farm animals used for research purposes: A survey on purchase, housing and hygiene management. Animals 11(8), 2158.

Background: Farm animals (FAs) are frequently used in biomedical research. Recommendations for the purchase, housing and health monitoring of these animals (sheep, goats, cattle and pigs) are still missing, and many institutes have developed their...

Lawrence, K., Sherwen, S. L., Larsen, H. 2021. Natural habitat design for zoo-housed elasmobranch and teleost fish species improves behavioural repertoire and space use in a visitor facing exhibit. Animals 11(10), 2979.

This study investigated the behaviour of two Elasmobranch species; Southern fiddler ray (Trygonorrhina dumerilii, n = 1) and Port Jackson shark (Heterodontus portusjacksoni, n = 4) and two teleost species; moonlighter (Tilodon sexfasciatus, n =...

Falendysz, E. A., Calhoun, D. M., Smith, C. A. et al. 2020. Outside the box: Working with wildlife in biocontainment. ILAR Journal 61(1), 72-85.

Research with captive wildlife in Animal Biosafety Level 2 (ABSL2) and 3 (ABSL3) facilities is becoming increasingly necessary as emerging and re-emerging diseases involving wildlife have increasing impacts on human, animal, and environmental health. Utilizing...

da Silva Medeiros Elidio, H., Coelho, J. W. R., Cavalcanti Pereira da Silva, L. C. et al. 2021. Housing density and aggression in Syrian hamsters. JAALAS 60(5), 506-509.

The Syrian hamster (Mesocricetus auratus) is a solitary and naturally territorial animal, with female hamsters being more aggressive than males. This behavior makes handling difficult because they are usually housed in groups, which can lead...

Tölgyesi, B., Bakker, J., Nagy, K. et al. 2021. Refined acquisition of high-resolution chest CTs in macaques by free breathing. Laboratory Animals 55(6), 551-559.

The use of medical imaging as a non-invasive or minimally invasive method to assess disease or treatment response continues to grow. A similar trend is observed in pre-clinical research, in general, and more specifically in...

O’Malley, M., Woods, J. M., Byrant, J. et al. 2021. How is Western lowland gorilla (Gorilla gorilla gorilla) behavior and physiology impacted by 360 degree visitor viewing access? Animal Behavior and Cognition 8(4), 468–480.

The effect visitors may have on the welfare of professionally managed animals is vital to consider. The present study utilized an experimental approach to examine how 360° visitor viewing access (i.e., viewing from all sides...

Ross, S. R., Leinwand, J. G. 2020. A review of research in primate sanctuaries. Biology Letters 16(4), 1620200033.

While non-human primate studies have long been conducted in laboratories, and more recently at zoological parks, sanctuaries are increasingly considered a viable setting for research. Accredited sanctuaries in non-range countries house thousands of primates formerly...

Matsuzawa, T. 2020. WISH cages: Constructing multiple habitats for captive chimpanzees. Primates 61(2), 139–148.

This article aims to introduce environmental enrichment for captive chimpanzees in Japan in a historical context. It describes the most recent endeavor of constructing huge cages and connecting multiple habitats. The Ai Project, a series...

Earl, S. C., Hopper, L. M., Ross, S. R. 2020. Same space, different species: The influence of exhibit design on the expression of zoo-housed apes’ species-typical retiring behaviors. Animals 10(5), 836.

Wild chimpanzees frequently make arboreal nests, while wild lowland gorillas typically nest on the ground. We aimed to understand whether zoo-housed apes’ use of elevated spaces for retiring similarly differed between species and across exhibits...