Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Lange, A., Waiblinger, S., van Hasselt, R. et al. 2021. Effects of restraint on heifers during gentle human-animal interactions. Applied Animal Behaviour Science 243, 105445.

Gentle human-animal interactions can induce positive emotions in cattle and enhance their welfare. We investigated whether a change in the animals’ perceived control over the situation influences their perception of the interactions. We compared the...

Wenker, M. L., van Reenen, C. G., de Oliveira, D. et al. 2021. Calf-directed affiliative behaviour of dairy cows in two types of cow-calf contact systems. Applied Animal Behaviour Science 243, 105461.

There is an interest in alternative rearing systems that allow for prolonged cow-calf contact (CCC). Yet, a better understanding of cows’ affiliative behaviour in those systems is needed. We evaluated the effect of type of...

Thomas, A. D., Orsel, K., Cortés, J. A. et al. 2021. Impact of digital dermatitis on feedlot cattle behaviour. Applied Animal Behaviour Science 244, 105468.

Digital dermatitis (DD) is an infectious disease affecting the bovine digital skin which can cause lameness and significantly affect animal welfare and economics. Digital dermatitis has emerged in feedlots and early identification of DD lesions...

Falendysz, E. A., Calhoun, D. M., Smith, C. A. et al. 2020. Outside the box: Working with wildlife in biocontainment. ILAR Journal 61(1), 72-85.

Research with captive wildlife in Animal Biosafety Level 2 (ABSL2) and 3 (ABSL3) facilities is becoming increasingly necessary as emerging and re-emerging diseases involving wildlife have increasing impacts on human, animal, and environmental health. Utilizing...

Penfold, L. M., Norton, T., Asa, C. S. 2021. Effects of GnRH agonists on testosterone and testosterone-stimulated parameters for contraception and aggression reduction in male lion-tailed Macaques (Macaca silenus). Zoo Biology 40(6), 541-550.

Managing social groups in zoos requires controlling reproduction in individuals that do not have a current breeding recommendation, while simultaneously maintaining social harmony and animal well-being. Contraceptives, such as gonadotropin releasing-hormone (GnRH) agonists, that suppress...

Li, C., Wang, J., Jin, S. et al. 2020. Artificial grooming during early life could boost the activity and human affinity of Holstein female calves. Animals 10(2), 302.

Early cow–calf separation management induced various welfare problems for dairy calves. We mimicked the maternal licking by manually brushing right after the Holstein female calves were born and during their first week of life, termed...

Zemanova, M. A. 2020. Towards more compassionate wildlife research through the 3Rs principles: Moving from invasive to noninvasive methods. Wildlife Biology 2020(1), no page numbers.

Research in ecology and wildlife biology remains crucial for increasing our knowledge and improving species management and conservation in the midst of the current biodiversity crisis. However, obtaining information on population status often involves invasive...

O’Leary, N. W., Byrne, D. T., Garcia, P. et al. 2020. Grazing cow behavior’s association with mild and moderate lameness. Animals 10(4), 661.

Accelerometer-based mobility scoring has focused on cow behaviors such as lying and walking. Accuracy levels as high as 91% have been previously reported. However, there has been limited replication of results. Here, measures previously identified...

Fujinami, Y., Semba, Y. 2020. Non-lethal assessment of reproductive stage for female blue sharks Prionace glauca using sex steroid hormones. Journal of Fish Biology 96(6), 1501–1504.

Plasma concentrations of progesterone (P4) and 17β‐oestradiol (E2) in juvenile, pre‐ovulatory, early, mid‐ or late pregnancy stages of female blue sharks Prionace glauca were analysed. Concentrations of P4 were significantly higher in pregnant than in...

Reinhardt, V. (ed.) 2020. It’s Okay to Cry - Discussions by the Laboratory Animal Refinement & Enrichment Forum [LAREF], Volume V. Animal Welfare Institute, Washington, DC.

This is the 5th volume of selected discussions that took place on the electronic Laboratory Animal Refinement & Enrichment Forum between February 2016 and December 2019. The forum was created in October 2002; it allows...

Andrade, B. M.T., Freire-Filho, R., Bezerra, B. 2020. The behaviours of a female blonde capuchin (Sapajus flavius) towards her dead infant. Behaviour 157(14/15), 1231-1238.

Here we describe the behaviour of a female blonde capuchin (Sapajus flavius) towards her dead infant and discuss possible explanations linked to the anecdotal event. We conducted our study in a fragment of Atlantic forest...

Munari, C., Ponzio, P., Macchi, E. et al. 2020. A multifactorial evaluation of different reproductive rhythms and housing systems for improving welfare in rabbit does. Applied Animal Behaviour Science 230, 105047.

The most widespread reproductive rhythm practiced in rabbit farming is based on artificial insemination (AI) performed at around 11 days pospartum. This approach results in high production rates, but requires high yearly replacement of animals...

Bernhard, J. K., Vidondo, B., Achermann, R. L. et al. 2020. Slightly and moderately lame cows in tie stalls behave differently from non-lame controls. A matched case-control study. Frontiers in Veterinary Science 7, 594825.

Lameness affects dairy cows worldwide and is usually associated with pain. Behavioral differences in lame compared to non-lame tie-stall-housed dairy cows might be less pronounced than in free-stall-housed, since the principle demands to a cow's...

Contreras-Aguilar, M. D., Vallejo-Mateo, P. J., Želvytė, R. et al. 2020. Changes in saliva analytes associated with lameness in cows: A pilot study. Animals 10(11), 2078.

The possible changes in a panel of 21 salivary analytes on a population of cows with lameness before and after treating lameness by hoof trimming were analyzed. Then, the analytes that showed significant changes were...

Cortese, M., Brščić, M., Ughelini, N. et al. 2020. Effectiveness of stocking density reduction on mitigating lameness in a Charolais finishing beef cattle farm. Animals 10(7), 1147.

This study aimed at assessing whether a reduction in stocking density (SKD) would mitigate lameness and positively affect the performance and health of Charolais bulls in an Italian commercial farm. Bulls were distributed in groups...

Pedrazzani, A. S., Quintiliano, M. H., Bolfe, F. et al. 2020. Tilapia on-farm welfare assessment protocol for semi-intensive production systems. Frontiers in Veterinary Science 7, 606388.

The aim of this study was to develop and test a tilapia on-farm welfare assessment protocol, based on Brazilian semi-intensive production systems. The study included two mains steps: the elaboration of tilapia welfare protocol and...

Sadiq, M. B., Ramanoon, S. Z., Mansor, R. et al. 2020. Claw trimming as a lameness management practice and the association with welfare and production in dairy cows. Animals 10(9), 1515.

Lameness resulting from claw lesions remains a pressing welfare issue in dairy cows. Claw trimming (CT) is a common practice for prevention and management of clinically lame cows. This review summarizes the results of studies...

Zobel, G., Proudfoot, K., Cave, V. et al. 2020. The use of hides during and after calving in New Zealand dairy cows. Animals 10(12), 2255.

Isolation during calving is a common dairy cow behavior, however it has not been examined in large outdoor group settings. The provision of “hides” was monitored for its impact on calving location and cow–calf behavior...

Oehm, A. W., Jensen, K. C., Tautenhahn, A. et al. 2020. Factors associated with lameness in tie stall housed dairy cows in south Germany. Frontiers in Veterinary Science 7, 601640.

Lameness remains a major concern for animal welfare and productivity in modern dairy production. Even though a trend toward loose housing systems exists and the public expects livestock to be kept under conditions where freedom...

Gladden, N., Ellis, K., Martin, J. et al. 2019. A single dose of ketoprofen in the immediate postpartum period has the potential to improve dairy calf welfare in the first 48 h of life. Applied Animal Behaviour Science 212, 19-29.

The welfare impact of birth on newborn calves has rarely been studied. Dystocia in particular may have significant welfare costs for calves. While analgesia is sometimes provided to calves born to difficult parturition by veterinary...

Hopper, L. M., Fernandez‐Duque, E., Williams, L. E. 2019. Testing the weekend effect hypothesis: Time of day and lunar phase better predict the timing of births in laboratory‐housed primates than day of week. American Journal of Primatology 81(7), e23026.

The weekend effect hypothesis proposes that captive primates are more likely to give birth during times of low disturbance and reduced staff activity. The hypothesis specifically predicts that laboratory‐housed primates will be more likely to...

Bill, J., Rauterberg, S. L., Stracke, J. et al. 2019. Prevalence and severity of tail lesions as a possible welfare indicator for rabbit does. Animal Welfare 28(4), 511-518.

The impact of behavioural disorders on animal welfare in modern animal husbandry has been much debated. While other abnormal behaviours have been explored at length, there are a paucity of studies on tail-biting in rabbits...

Association of Primate Veterinarians. 2019. Association of Primate Veterinarians’ guidelines for nonhuman primate restraint. JAALAS 58(3), 282-284.

The Association of Primate Veterinarians (APV) recognizes that several forms of restraint, including physical and chemical, are necessary for the safe handling of nonhuman primates (NHPs). The following guidelines aim to provide information to researchers...

Kennedy, L. H., Nowland, M. H., Nemzek-Hamlin, J. A. 2019. Surgical treatment of spontaneous endometriosis in rhesus macaques (Macaca mulatta): 11 cases (2007–2011). Journal of the American Veterinary Medical Association 254(12), 1454-1458.

OBJECTIVE To determine long-term outcome for rhesus macaques (Macaca mulatta) with endometriosis that underwent surgical treatment and identify factors potentially associated with long-term outcome. DESIGN Retrospective case series. ANIMALS 11 female rhesus macaques. PROCEDURES Medical...

Schwarzkopf, S., Kinoshita, A., Kluess, J. et al. 2019. Weaning Holstein calves at 17 weeks of age enables smooth transition from liquid to solid feed. Animals 9(12), 1132.

Development of calves depends on prenatal and postnatal conditions. Primiparous cows were still maturing during pregnancy, which can lead to negative intrauterine conditions and affect the calf’s metabolism. It is hypothesized that weaning calves at...