Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Felgenhauer, J. L., Brune, J. E., Long, M. E. et al. 2020. Evaluation of nutritional gel supplementation in C57BL/6J mice infected with mouse-adapted Influenza A/PR/8/34 virus. Comparative Medicine 70(6), 471-486.

Mice are a common animal model for the study of influenza virus A (IAV). IAV infection causes weight loss due to anorexia and dehydration, which can result in early removal of mice from a study...

Do, J. P., Defensor, E. B., Ichim, C. V. et al. 2020. Automated and continuous monitoring of animal welfare through digital alerting. Comparative Medicine 70(4), 313-327.

A primary goal in preclinical animal research is respectful and responsible care aimed toward minimizing stress and discomfort while enhancing collection of accurate and reproducible scientific data. Researchers use hands-on clinical observations and measurements as...

Slavík, O., Horký, P., Velíšek, J., et al. 2020. Pupil size variation as a response to stress in European catfish and its application for social stress detection in albino conspecifics. PLOS ONE, 15(12), e0244017.

Hormonal changes such as increased cortisol level in blood plasma in response to stress and social environmental stimuli are common among vertebrates including humans and typically accompanied by other physiological processes, such as changes in...

Mogil, J. S., Pang, D. S. J., Silva Dutra, G. G. et al. 2020. The development and use of facial grimace scales for pain measurement in animals. Neuroscience & Biobehavioral Reviews 116, 480-496.

The measurement of pain in animals is surprisingly complex, and remains a critical issue in veterinary care and biomedical research. Based on the known utility of pain measurement via facial expression in verbal and especially...

Lefebvre, E., Granon, S., Chauveau, F. 2020. Social context increases ultrasonic vocalizations during restraint in adult mice. Animal Cognition 23(2), 351–359.

Adult mice emit many ultrasonic vocalizations (USVs) during social interaction tasks, but only a few studies have yet reported USVs in stressed adult mice. Our aim was to study which experimental conditions favor USV emission...

Ellis, T., Rimmer, G. S. E., Parker, S.-J. et al. 2019. In-tank underwater cameras can refine monitoring of laboratory fish. Animal Welfare 28(2), 191-203.

Laboratory animals need to be monitored to check the status of their health and welfare. Routine checks of laboratory fish are limited to visual observations of physical appearance and behaviour, but for species held in...

Fehlhaber, B., Heinemann, A. S., Rübensam, K. et al. 2019. A sensitive scoring system for the longitudinal clinical evaluation and prediction of lethal disease outcomes in newborn mice. Scientific Reports 9, 5919.

Neonatal animal models are increasingly employed in order to unravel age-specific disease mechanisms. Appropriate tools objectifying the clinical condition of murine neonates are lacking. In this study, we tested a scoring system specifically designed for...

Cho, C., Michalidis, V., Lecker, I. et al. 2019. Evaluating analgesic efficacy and administration route following craniotomy in mice using the grimace scale. Scientific Reports 9, 359.

Most research laboratories abide by guidelines and mandates set by their research institution regarding the administration of analgesics to control pain during the postoperative period. Unfortunately, measuring pain originating from the head is difficult, making...

Howell, C. P., Cheyne, S. M. 2019. Complexities of using wild versus captive activity budget comparisons for assessing captive primate welfare. Journal of Applied Animal Welfare Science 22(1), 78-96.

Activity budget comparisons between groups or individuals in the wild and those in captivity are commonly used to determine the range of wild-type behaviors that nonhuman animals in captivity perform. These comparisons are conducted with...

Arechavala-Lopez, P., Saraiva, J. L. 2019. Welfare of Cultured and Experimental Fishes. Basel, Switzerland: MDPI, 132 pages.

This open access book is a printed edition of the Special Issue on Welfare of Cultured and Experimental Fishes that was published in the journal Fishes. The PDF is free for download.

Fife-Cook, I., Franks, B. 2019. Positive welfare for fishes: Rationale and areas for future study. Fishes 4(2), 31.

Traditional animal welfare paradigms have focused on maintaining physical health and mitigating negative impacts to wellbeing. Recently, however, the field has increasingly recognized the importance of positive welfare (i.e., mental and physical states that exceed...

Saraiva, J. L., Arechavala-Lopez, P., Castanheira, M. F. et al. 2019. A global assessment of welfare in farmed fishes: The FishEthoBase. Fishes 4(2), 30.

Fish welfare is an essential issue that needs to be tackled by the aquaculture industry. In order to address it, studies have been limited to a small number of species and the information is generally...

López-Álvarez, J., Sanjorge, Y., Soloaga, S. et al. 2019. Looking for visitor's effect in sanctuaries: Implications of guided visitor groups on the behavior of the chimpanzees at Fundació Mona. Animals 9(6), 347.

The question of 'if and how captive primates are affected by visitors' has gained increasing attention over the last decades. Although the majority reported undesirable effects on behavior and wellbeing, many studies reported contradicting results...

Fermo, J. L., Schnaider, M. A., Silva, A. H. P. et al. 2019. Only when it feels good: Specific cat vocalizations other than meowing. Animals 9(11), 878.

Our objective was to identify and characterize the types of vocalization other than meowing (VOM) in two contexts, a pleasant and an aversive situation, and to study the effect of the sex of the animal...

Carbajal, A., Soler, P., Tallo-Parra, O. et al. 2019. Towards non-invasive methods in measuring fish welfare: The measurement of cortisol concentrations in fish skin mucus as a biomarker of habitat quality. Animals 9(11), 939.

Cortisol levels in fish skin mucus have shown to be good stress indicators in farm fish exposed to different stressors. Its applicability in free-ranging animals subject to long-term environmental stressors though remains to be explored...

Galvin, M. 2018. Refinement of tumour passage by optimisation of the tissue disaggregation protocol. Animal Technology and Welfare 17(3), 173-174 (IAT Congress 2018 Platform Presentation Abstract).

Surgical implantation of tumour pieces has been used regularly in the passage of tumour models. This involves an invasive surgical procedure, carried out under anaesthesia; ensuring mice have adequate pain relief and peri-operative care. The...

Filby, E. 2019. Give us a break! Animal Technology and Welfare 18(1), 45-48.

Literature is replete with studies on stressors to laboratory rodents; knowing the impact research and husbandry interventions, such as routine cage changing, have on rodents’ stress levels, physiology and behaviour, we hypothesised that animals recovering...

Dench, J., McLaren-Jones, R., Vancollie, V. et al. 2019. Optimising health & welfare tracking using the Sanger Mouse Database. Animal Technology and Welfare 18(1), 62-64.

Health tracking of animals is required legally under the Animals (Scientific Procedures) Act 1986 (ASPA) to prevent pain, avoidable suffering, distress or lasting harm. This is important with Genetically Modified (GM) animals as they are...

Gurney, L. 2019. In-vivo imaging at NIBSC and how we use it to promote the 3Rs. Animal Technology and Welfare 18(2), 143-144. (IAT Congress 2018 Poster Presentation)

In-vivo imaging is a revolutionary technology offering a powerful tool for constructing studies involving mice. In the Biological Services Department (BSD) at NIBSC, the IVIS® Spectrum In Vivo System model is used to perform our...

Urrutia, A., Martínez-Byer, S., Szenczi, P. et al. 2019. Stable individual differences in vocalisation and motor activity during acute stress in the domestic cat. Behavioural Processes 165, 58-65.

The behavioural assessment of individual animals in stressful situations should consider measures which are consistent across repeated testing, and therefore truly representative of an individual's behaviour. Here we report a study conducted on 40 neutered...

Parsons, C. E., LeBeau, R. T., Kringelbach, M. L. et al. 2019. Pawsitively sad: Pet-owners are more sensitive to negative emotion in animal distress vocalizations. Royal Society Open Science 6(8), 181555.

Pets have numerous, effective methods to communicate with their human hosts. Perhaps most conspicuous of these are distress vocalizations: in cats, the ‘miaow’ and in dogs, the ‘whine’ or ‘whimper’. We compared a sample of...

Cowley, P. M., Roberts, C. R., Baker, A. J. 2019. Monitoring the health status of mice with bleomycin-induced lung injury by using body condition scoring. Comparative Medicine 69(2), 95–102.

Well-defined, humane endpoints aid in monitoring animal health status during disease development. Body condition scoring (BCS) is a method for assessing health status in mouse studies where wasting and death are potential endpoints. Whether BCS...

Association of Primate Veterinarians. 2019. Association of Primate Veterinarians’ guidelines for nonhuman primate restraint. JAALAS 58(3), 282-284.

The Association of Primate Veterinarians (APV) recognizes that several forms of restraint, including physical and chemical, are necessary for the safe handling of nonhuman primates (NHPs). The following guidelines aim to provide information to researchers...

Chatigny, F. 2019. The controversy on fish pain: A veterinarian’s perspective. Journal of Applied Animal Welfare Science 22(4), 400-410.

Fish welfare is still a relatively new field. As such, regulations and protocols to ensure fish welfare are currently limited and vary considerably in different jurisdictions. This is in part because of the ongoing controversy...

Ahloy-Dallaire, J., Klein, J. D., Davis, J. K. et al. 2019. Automated monitoring of mouse feeding and body weight for continuous health assessment. Laboratory Animals 53(4), 342–351.

Routine health assessment of laboratory rodents can be improved using automated home cage monitoring. Continuous, non-stressful, objective assessment of rodents unaware that they are being watched, including during their active dark period, reveals behavioural and...